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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3321 and Ac3H11_3322 are separated by 43 nucleotides
Ac3H11_3322 and Ac3H11_3323 are separated by 6 nucleotides
Ac3H11_3323 and Ac3H11_3324 are separated by 32 nucleotides
Ac3H11_3324 and Ac3H11_3325 are separated by 250 nucleotides
Ac3H11_3321 - hypothetical protein, at 2,060 to 2,392
_3321
Ac3H11_3322 - Ammonium transporter, at 2,436 to 3,791
_3322
Ac3H11_3323 - hypothetical protein, at 3,798 to 4,145
_3323
Ac3H11_3324 - FIG011065: hypothetical protein, at 4,178 to 4,936
_3324
Ac3H11_3325 - Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1), at 5,187 to 5,948
_3325
Group
Condition
Ac3H11
_3321
Ac3H11
_3322
Ac3H11
_3323
Ac3H11
_3324
Ac3H11
_3325
motility
inner cut, R2A soft agar motility assay
-2.3
+0.2
-0.1
+0.1
-0.4
lb
LB
-1.9
-0.0
-0.2
-0.2
-0.0
stress
Aluminum chloride 4 mM
-2.1
-0.1
-0.1
+0.3
+0.0
stress
copper (II) chloride 2 mM
-2.1
+0.6
-0.4
+0.1
-0.1
nitrogen source
L-Arginine (N)
-0.3
+0.2
-0.4
-0.2
-0.9
carbon source
D-Mannose (C)
-1.2
+0.1
-0.6
+0.0
+0.0
carbon source
D-Fructose (C)
-1.1
+0.1
-0.4
-0.2
+0.2
stress
Phosphomycin 0.06 mg/ml
-1.9
+0.2
+0.1
+0.2
+0.1
stress
nitrite 10 mM
-1.8
+0.1
-0.1
+0.3
+0.2
pH
LB, pH10
-1.9
+0.1
+0.1
+0.4
-0.0
stress
Cobalt chloride 0.4 mM
-1.6
+0.0
-0.0
+0.3
+0.2
carbon source
a-Ketoglutaric (C)
-1.8
-0.1
+0.7
+0.1
+0.0
pH
LB, pH10
-0.5
+0.4
-0.2
-0.2
-0.5
stress
Chlorate 20 mM
-1.4
-0.2
-0.0
+0.3
+0.3
carbon source
succinate (C)
-1.7
+0.1
+0.0
+0.7
+0.1
carbon source
succinate (C)
+1.0
-0.1
+0.5
-1.1
-0.2
carbon source
D-Glucose (C)
+1.0
-0.1
-0.3
-0.4
-0.1
carbon source
L-Arabinose (C)
+1.0
-0.0
-0.7
+0.1
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+1.3
-0.4
+0.0
-0.1
-0.2
phage
phage 93.2
+1.6
-0.0
-0.2
-0.0
-0.7
carbon source
D-Lactate (C)
+0.6
-0.0
+0.6
+0.2
-0.4
carbon source
D-Gluconic Acid (C)
+0.8
-0.3
+1.8
-0.5
-0.6
carbon source
D-Fructose (C)
+1.4
-0.0
+0.0
+0.1
+0.3
motility
inner cut, R2A soft agar motility assay
-0.8
+0.3
+0.3
+1.0
+1.0
carbon source
pyruvate (C)
+0.8
-0.1
+1.0
+0.1
+0.1
stress
Cisplatin 0.005 mg/ml
+1.4
+0.2
+0.0
+0.7
-0.4
lb
LB
+0.7
+0.2
-0.1
+0.6
+0.6
carbon source
pyruvate (C)
+0.7
-0.1
+1.3
+0.1
+0.2
carbon source
a-Ketoglutaric (C)
+1.1
+0.0
+0.9
-0.1
+0.5
carbon source
D-Gluconic Acid (C)
+1.6
+0.1
+1.5
-0.0
+0.1
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Ac3H11_3323
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