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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3293 and Ac3H11_3294 are separated by 175 nucleotides
Ac3H11_3294 and Ac3H11_3295 are separated by 25 nucleotides
Ac3H11_3295 and Ac3H11_3296 are separated by 35 nucleotides
Ac3H11_3296 and Ac3H11_3297 are separated by 70 nucleotides
Ac3H11_3293 - Argininosuccinate lyase (EC 4.3.2.1), at 25,988 to 27,628
_3293
Ac3H11_3294 - Chromosome initiation inhibitor, at 27,804 to 28,748
_3294
Ac3H11_3295 - Probable protease (EC 3.4.24.3), at 28,774 to 30,213
_3295
Ac3H11_3296 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 30,249 to 31,298
_3296
Ac3H11_3297 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 31,369 to 32,433
_3297
Group
Condition
Ac3H11
_3293
Ac3H11
_3294
Ac3H11
_3295
Ac3H11
_3296
Ac3H11
_3297
nitrogen source
L-Histidine (N)
-0.0
+0.2
-0.0
-0.3
-1.6
stress
2-Furfuraldehyde 0.06 vol%
+0.2
-0.2
+0.1
-0.1
-1.4
stress
Chlorate 20 mM
-0.1
-0.0
+0.1
-0.2
-0.7
nitrogen source
L-Threonine (N)
+0.1
+0.0
-0.4
-0.3
-0.4
carbon source
a-Ketoglutaric (C)
-0.1
-0.7
+0.0
+0.0
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.4
+0.1
-0.4
-0.1
lb
LB
+0.1
-0.1
+0.1
-0.2
-0.7
stress
Sisomicin 0.0005 mg/ml
+0.1
-0.2
+0.1
-0.1
-0.8
lb
LB
+0.1
+0.2
+0.1
-0.1
-0.8
stress
Nickel (II) chloride 0.6 mM
+0.0
-0.1
+0.0
+0.2
-0.7
motility
inner cut, R2A soft agar motility assay
-0.4
-0.4
+0.1
+0.2
+0.0
stress
copper (II) chloride 2 mM
-0.3
-0.7
+0.0
+0.3
+0.3
stress
Chlorite 0.1 mM
+0.1
-0.0
+0.1
+0.1
-0.7
nitrogen source
Ammonium chloride (N)
+0.2
+0.2
-0.3
-0.6
+0.2
lb
LB
+0.1
+0.1
+0.2
-0.2
-0.4
stress
Aluminum chloride 4 mM
+0.2
-0.3
+0.1
+0.1
-0.2
stress
Sisomicin 0.001 mg/ml
-0.0
+0.1
+0.2
+0.2
-0.5
stress
Cisplatin 0.005 mg/ml
-0.3
+0.2
+0.1
+0.2
-0.3
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.4
+0.4
+0.3
-0.3
stress
A22 0.025 mg/ml
-0.1
+0.4
+0.3
-0.0
-0.3
stress
Phosphomycin 0.02 mg/ml
-0.0
+0.5
+0.2
-0.0
-0.3
stress
perchlorate 10 mM
-0.1
+0.3
+0.2
+0.2
-0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.1
+0.3
-0.2
+0.3
-0.2
nitrogen source
D-Alanine (N)
+0.2
+0.8
-0.4
-0.1
-0.1
lb
LB
+0.1
+0.3
+0.2
-0.1
-0.1
lb
LB
+0.3
+0.3
+0.3
+0.4
-0.3
stress
nitrate 100 mM
-0.1
+0.4
+0.1
+0.3
+0.3
pH
LB, pH10
+0.1
+0.5
-0.0
+0.1
+1.1
pH
LB, pH10
+0.4
+0.6
+0.0
+0.1
+1.4
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.1
+0.2
+0.5
+2.6
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