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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3272 and Ac3H11_3273 are separated by 9 nucleotides
Ac3H11_3273 and Ac3H11_3274 are separated by 410 nucleotides
Ac3H11_3274 and Ac3H11_3275 are separated by 200 nucleotides
Ac3H11_3275 and Ac3H11_3276 are separated by 88 nucleotides
Ac3H11_3272 - hypothetical protein, at 3,280 to 4,212
_3272
Ac3H11_3273 - hypothetical protein, at 4,222 to 4,449
_3273
Ac3H11_3274 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 4,860 to 7,571
_3274
Ac3H11_3275 - putative lipoprotein, at 7,772 to 8,527
_3275
Ac3H11_3276 - hypothetical protein, at 8,616 to 9,071
_3276
Group
Condition
Ac3H11
_3272
Ac3H11
_3273
Ac3H11
_3274
Ac3H11
_3275
Ac3H11
_3276
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.2
-0.4
+0.1
-3.9
stress
Cisplatin 0.005 mg/ml
-0.2
+0.7
-0.2
+0.1
-4.6
pH
LB, pH10
+0.1
-0.4
+1.0
-0.3
-2.6
nitrogen source
L-Histidine (N)
-0.2
-0.1
-1.8
-0.0
+0.0
pH
LB, pH10
-0.0
+0.1
+0.9
+0.0
-3.0
stress
2-Furfuraldehyde 0.06 vol%
+0.1
-0.2
-1.0
+0.1
-0.0
nitrogen source
L-Alanine (N)
-0.1
-0.8
-0.4
+0.3
+0.1
stress
sodium fluoride 25 mM
+0.2
-0.2
+0.2
-0.1
-1.0
stress
Cobalt chloride 0.32 mM
+0.0
+0.2
-0.3
-0.1
-0.7
stress
nitrate 20 mM
-0.1
-0.5
-0.2
-0.1
+0.2
stress
Aluminum chloride 4 mM
-0.0
+0.3
-0.1
+0.1
-0.8
stress
Dimethyl Sulfoxide 6 vol%
+0.2
+0.3
-0.0
-0.2
-0.8
stress
Chlorate 20 mM
+0.2
-0.1
-0.7
-0.1
+0.0
pH
LB, pH9
+0.1
-0.3
+0.4
-0.2
-0.7
lb
LB
+0.1
+0.2
-1.0
+0.1
+0.1
stress
Sisomicin 0.001 mg/ml
+0.0
+0.3
-0.5
+0.1
-0.4
stress
Phosphomycin 0.06 mg/ml
-0.1
+0.1
-0.8
+0.2
+0.1
lb
LB
+0.1
+0.3
-0.8
+0.1
-0.0
stress
perchlorate 25 mM
+0.1
-0.0
-0.1
+0.4
-0.7
stress
Nickel (II) chloride 0.6 mM
+0.0
-0.0
-0.5
-0.2
+0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.4
-0.7
+0.0
+0.0
lb
LB
+0.1
+0.2
-0.7
+0.1
+0.0
lb
LB
-0.2
+0.1
-0.6
+0.3
+0.2
motility
inner cut, R2A soft agar motility assay
+0.1
+0.1
-0.0
-0.6
+0.4
stress
Nickel (II) chloride 0.6 mM
-0.2
+0.0
-0.3
+0.1
+0.6
nitrogen source
L-Isoleucine (N)
-0.2
+0.2
-0.2
+0.2
+0.3
carbon source
a-Ketoglutaric (C)
+0.2
+0.2
-0.1
+0.3
-0.3
stress
copper (II) chloride 2 mM
+0.3
-0.3
+0.2
-0.1
+0.5
nitrogen source
Ammonium chloride (N)
-0.3
+0.5
+0.3
-0.1
+0.8
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.4
+2.8
-0.4
-0.3
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Ac3H11_3274
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