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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_320 and Ac3H11_321 overlap by 29 nucleotides
Ac3H11_321 and Ac3H11_322 are separated by 54 nucleotides
Ac3H11_322 and Ac3H11_323 are separated by 129 nucleotides
Ac3H11_323 and Ac3H11_324 are separated by 15 nucleotides
Ac3H11_320 - AttE component of AttEFGH ABC transport system, at 144,459 to 145,112
_320
Ac3H11_321 - hypothetical protein, at 145,084 to 145,290
_321
Ac3H11_322 - Transcriptional regulatory protein, at 145,345 to 146,541
_322
Ac3H11_323 - hypothetical protein, at 146,671 to 146,787
_323
Ac3H11_324 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 146,803 to 149,469
_324
Group
Condition
Ac3H11
_320
Ac3H11
_321
Ac3H11
_322
Ac3H11
_323
Ac3H11
_324
motility
inner cut, R2A soft agar motility assay
-2.5
-0.8
-0.2
N.D.
-0.0
phage
phage 93.1
-1.4
-0.6
-0.3
N.D.
+0.1
carbon source
D-Gluconic Acid (C)
-1.4
-0.7
+0.2
N.D.
-0.3
stress
Sisomicin 0.001 mg/ml
-1.1
-0.3
-0.0
N.D.
-0.2
nitrogen source
Ammonium chloride (N)
-0.6
-1.1
+0.1
N.D.
+0.1
lb
LB
-1.0
-0.3
-0.2
N.D.
-0.1
stress
sodium fluoride 25 mM
-1.5
+0.1
+0.0
N.D.
+0.0
motility
inner cut, R2A soft agar motility assay
-2.4
+0.3
+0.7
N.D.
+0.1
stress
Chlorite 0.1 mM
-1.3
+0.4
-0.4
N.D.
+0.1
stress
Bacitracin 0.016 mg/ml
-0.5
-0.3
-0.1
N.D.
-0.2
stress
Cobalt chloride 0.16 mM
-0.6
-0.2
-0.2
N.D.
-0.1
carbon source
pyruvate (C)
-0.8
+0.1
-0.1
N.D.
-0.3
carbon source
D,L-Lactate (C)
-0.9
+0.1
-0.2
N.D.
-0.1
carbon source
L-Lactate (C)
-1.2
+0.3
-0.1
N.D.
-0.0
phage
phage 93.1
-1.0
+0.2
+0.1
N.D.
-0.2
carbon source
a-Ketoglutaric (C)
-0.6
+0.2
-0.0
N.D.
-0.5
phage
phage 93.2
-0.8
+0.2
-0.2
N.D.
-0.1
carbon source
a-Ketoglutaric (C)
-0.5
+0.3
-0.1
N.D.
-0.5
nitrogen source
D-Alanine (N)
-1.5
+0.3
+0.5
N.D.
+0.1
lb
LB
+0.5
-1.0
+0.0
N.D.
+0.0
carbon source
pyruvate (C)
-0.3
+0.4
-0.2
N.D.
-0.3
stress
Phosphomycin 0.06 mg/ml
-0.4
-0.4
+0.2
N.D.
+0.1
stress
copper (II) chloride 1 mM
-0.7
+0.3
-0.0
N.D.
+0.0
pH
LB, pH10
-0.5
+0.1
+0.3
N.D.
+0.6
stress
Nickel (II) chloride 0.6 mM
+0.4
+0.4
-0.2
N.D.
-0.3
stress
Aluminum chloride 4 mM
+0.6
+0.3
-0.3
N.D.
+0.1
stress
Cisplatin 0.005 mg/ml
+0.7
-0.2
-0.0
N.D.
+0.3
carbon source
L-Arabinose (C)
+0.2
+1.2
-0.3
N.D.
-0.2
stress
Ceftazidime 0.01 mg/ml
+0.9
+0.0
+0.1
N.D.
+0.0
stress
Cisplatin 0.0025 mg/ml
+1.2
+0.4
+0.1
N.D.
+0.1
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