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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3217 and Ac3H11_3218 are separated by 220 nucleotides
Ac3H11_3218 and Ac3H11_3219 are separated by 310 nucleotides
Ac3H11_3219 and Ac3H11_3220 are separated by 54 nucleotides
Ac3H11_3220 and Ac3H11_3221 are separated by 66 nucleotides
Ac3H11_3217 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 125,485 to 126,645
_3217
Ac3H11_3218 - Response regulator NasT, at 126,866 to 127,504
_3218
Ac3H11_3219 - hypothetical protein, at 127,815 to 127,949
_3219
Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248
_3220
Ac3H11_3221 - Cyanate ABC transporter, permease protein, at 129,315 to 130,289
_3221
Group
Condition
Ac3H11
_3217
Ac3H11
_3218
Ac3H11
_3219
Ac3H11
_3220
Ac3H11
_3221
motility
inner cut, R2A soft agar motility assay
-0.0
-2.7
N.D.
-0.1
+0.1
stress
perchlorate 10 mM
+0.1
-1.7
N.D.
-0.1
-0.1
nitrogen source
L-tyrosine (N)
+0.1
-1.0
N.D.
-0.4
-0.5
carbon source
succinate (C)
+0.1
-1.6
N.D.
+0.1
+0.0
nitrogen source
L-Phenylalanine (N)
+0.0
-0.8
N.D.
-0.5
-0.1
pH
LB, pH6
+0.0
-1.4
N.D.
-0.0
-0.0
nitrogen source
Ammonium chloride (N)
+0.3
-1.9
N.D.
+0.1
+0.1
carbon source
a-Ketoglutaric (C)
-0.3
-0.8
N.D.
+0.0
-0.2
pH
LB, pH8
-0.0
-0.8
N.D.
-0.1
-0.2
pH
LB, pH5
+0.1
-1.1
N.D.
-0.2
+0.1
stress
Dimethyl Sulfoxide 6 vol%
-0.1
-0.6
N.D.
-0.1
-0.1
nitrogen source
L-Leucine (N)
+0.1
-0.3
N.D.
-0.8
+0.2
carbon source
D,L-Lactate (C)
+0.1
-0.9
N.D.
-0.1
+0.1
pH
LB, pH9
+0.2
-0.8
N.D.
+0.0
-0.2
lb
LB
+0.0
-0.8
N.D.
+0.1
-0.1
nitrogen source
Uridine (N)
+0.1
+0.1
N.D.
-0.5
-0.4
carbon source
succinate (C)
+0.2
-0.6
N.D.
-0.2
-0.0
pH
LB, pH10
-0.2
+0.5
N.D.
-0.6
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.2
-0.7
N.D.
+0.1
+0.3
stress
copper (II) chloride 2 mM
-0.4
+0.3
N.D.
-0.2
+0.5
stress
Sisomicin 0.001 mg/ml
-0.3
+0.5
N.D.
+0.0
+0.2
stress
nitrate 100 mM
-0.3
+0.7
N.D.
+0.2
-0.1
lb
LB
+0.2
+0.6
N.D.
-0.1
+0.1
stress
copper (II) chloride 1 mM
+0.1
+0.9
N.D.
-0.2
+0.0
nitrogen source
L-Threonine (N)
+0.0
+1.0
N.D.
+0.0
+0.0
stress
nitrate 20 mM
+0.0
+1.1
N.D.
+0.2
-0.2
stress
sodium fluoride 20 mM
-0.0
+1.5
N.D.
-0.3
-0.0
stress
2-Furfuraldehyde 0.06 vol%
-0.0
+1.2
N.D.
+0.2
-0.0
stress
Cobalt chloride 0.4 mM
-0.0
+1.8
N.D.
+0.3
-0.1
carbon source
D-Gluconic Acid (C)
+0.3
+1.9
N.D.
+0.3
-0.2
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