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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3206 and Ac3H11_3207 are separated by 219 nucleotides
Ac3H11_3207 and Ac3H11_3208 are separated by 44 nucleotides
Ac3H11_3208 and Ac3H11_3209 overlap by 12 nucleotides
Ac3H11_3209 and Ac3H11_3210 are separated by 6 nucleotides
Ac3H11_3206 - Small heat shock protein, at 112,395 to 112,784
_3206
Ac3H11_3207 - Transcriptional regulator, AraC family, at 113,004 to 113,978
_3207
Ac3H11_3208 - hypothetical protein, at 114,023 to 114,208
_3208
Ac3H11_3209 - Putative branched-chain amino acid transporter substrate-binding protein, at 114,197 to 115,402
_3209
Ac3H11_3210 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 115,409 to 116,287
_3210
Group
Condition
Ac3H11
_3206
Ac3H11
_3207
Ac3H11
_3208
Ac3H11
_3209
Ac3H11
_3210
stress
copper (II) chloride 2 mM
N.D.
-0.6
-1.3
-0.2
-0.8
stress
Ceftazidime 0.01 mg/ml
N.D.
-0.1
-1.6
-0.1
+0.0
carbon source
D-Fructose (C)
N.D.
-0.0
-1.5
-0.1
-0.2
stress
nitrate 100 mM
N.D.
-0.1
-1.3
-0.1
-0.2
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
+0.3
-2.2
+0.0
+0.1
motility
inner cut, R2A soft agar motility assay
N.D.
-0.2
-1.2
-0.0
-0.2
lb
LB
N.D.
-0.2
-0.9
-0.0
-0.3
stress
Bacitracin 0.008 mg/ml
N.D.
+0.2
-1.4
-0.3
+0.2
stress
Cobalt chloride 0.32 mM
N.D.
+0.1
-1.4
+0.1
+0.2
stress
Zinc 1 mM
N.D.
-0.3
-0.9
-0.1
+0.4
stress
copper (II) chloride 1 mM
N.D.
+0.1
-1.0
-0.2
+0.2
stress
Sisomicin 0.001 mg/ml
N.D.
+0.4
-1.0
-0.1
-0.1
carbon source
L-Arabinose (C)
N.D.
+0.5
-1.0
-0.2
+0.0
carbon source
propionate (C)
N.D.
-0.1
-1.2
+0.1
+0.5
stress
Bacitracin 0.016 mg/ml
N.D.
+0.1
-1.1
+0.2
+0.3
nitrogen source
Ammonium chloride (N)
N.D.
-0.0
+0.7
-0.6
-0.5
carbon source
L-Lactate (C)
N.D.
-0.4
+0.7
-0.1
-0.6
nitrogen source
Uridine (N)
N.D.
-0.2
+0.8
-0.2
-0.6
pH
LB, pH10
N.D.
-0.4
+0.8
-0.2
-0.4
pH
LB, pH10
N.D.
-0.6
+0.9
-0.2
+0.0
stress
perchlorate 25 mM
N.D.
+0.1
+0.9
-0.2
-0.4
stress
Cisplatin 0.005 mg/ml
N.D.
-0.4
+0.8
+0.0
+0.4
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
+1.2
-0.1
+0.2
carbon source
D-Sorbitol (C)
N.D.
+0.1
+0.9
-0.2
+0.3
stress
perchlorate 10 mM
N.D.
-0.2
+1.7
-0.1
-0.2
stress
Cobalt chloride 0.4 mM
N.D.
+0.4
+1.1
-0.1
+0.2
motility
inner cut, R2A soft agar motility assay
N.D.
+0.2
+1.3
+0.3
-0.2
phage
phage 93.1
N.D.
+0.1
+1.6
+0.3
-0.3
nitrogen source
L-Alanine (N)
N.D.
+0.0
+1.5
+0.3
-0.0
phage
phage 93.2
N.D.
+0.2
+1.7
+0.2
+0.1
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