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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_30 and Ac3H11_31 are separated by 121 nucleotides
Ac3H11_31 and Ac3H11_32 are separated by 52 nucleotides
Ac3H11_32 and Ac3H11_33 are separated by 27 nucleotides
Ac3H11_33 and Ac3H11_34 are separated by 148 nucleotides
Ac3H11_30 - Hypothetical protein YaeJ with similarity to translation release factor, at 27,305 to 27,718
_30
Ac3H11_31 - FIG074102: hypothetical protein, at 27,840 to 28,661
_31
Ac3H11_32 - Serine esterase, at 28,714 to 29,364
_32
Ac3H11_33 - Transcriptional regulator, AsnC family, at 29,392 to 29,859
_33
Ac3H11_34 - Methionine gamma-lyase (EC 4.4.1.11), at 30,008 to 31,312
_34
Group
Condition
Ac3H11
_30
Ac3H11
_31
Ac3H11
_32
Ac3H11
_33
Ac3H11
_34
carbon source
L-Lactate (C)
-0.1
-0.0
-1.0
-0.1
-0.0
pH
LB, pH10
-0.0
-0.1
-0.8
-0.2
+0.0
carbon source
pyruvate (C)
-0.1
-0.2
-0.5
-0.3
+0.0
nitrogen source
L-Alanine (N)
-0.3
+0.1
-0.5
-0.2
-0.1
stress
Chlorite 0.1 mM
+0.1
-0.0
-1.0
-0.0
+0.2
carbon source
succinate (C)
-0.1
+0.1
-0.6
-0.3
+0.1
stress
Zinc 1 mM
+0.1
+0.0
-0.8
-0.1
+0.1
stress
A22 0.025 mg/ml
+0.0
-0.2
-0.6
+0.1
+0.0
stress
Cobalt chloride 0.32 mM
+0.0
+0.1
-0.7
+0.1
-0.0
carbon source
D-Fructose (C)
+0.2
-0.0
-0.5
-0.2
+0.0
stress
Bacitracin 0.016 mg/ml
+0.1
-0.2
-0.5
+0.2
-0.0
motility
inner cut, R2A soft agar motility assay
-0.3
+0.0
-0.2
+0.4
-0.1
phage
phage 93.2
-0.2
-0.2
+0.4
-0.2
+0.0
stress
Sisomicin 0.001 mg/ml
-0.2
+0.3
-0.4
-0.1
+0.2
carbon source
D-Gluconic Acid (C)
+0.2
-0.1
-0.4
-0.0
+0.2
nitrogen source
Ammonium chloride (N)
+0.1
+0.1
-0.5
+0.3
-0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
-0.4
-0.0
+0.2
nitrogen source
L-Isoleucine (N)
-0.4
-0.2
+0.5
+0.2
+0.2
stress
Cisplatin 0.0025 mg/ml
+0.6
-0.0
-0.2
-0.3
+0.3
nitrogen source
D-Alanine (N)
-0.2
-0.2
+0.5
+0.1
+0.2
carbon source
D,L-Lactate (C)
+0.2
+0.0
+0.5
-0.2
-0.1
stress
Chlorate 20 mM
+0.2
+0.0
+0.6
-0.2
+0.0
lb
LB
+0.4
+0.1
-0.3
+0.2
+0.2
nitrogen source
L-Histidine (N)
+0.2
-0.2
+0.1
+0.3
+0.2
stress
Nickel (II) chloride 0.8 mM
+0.5
-0.1
+0.3
-0.1
-0.0
phage
phage 93.1
+0.4
-0.2
+0.6
+0.1
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.3
-0.2
+0.6
+0.0
+0.1
stress
Sisomicin 0.0005 mg/ml
+0.2
+0.1
+0.6
-0.1
+0.1
stress
Cisplatin 0.005 mg/ml
+0.3
-0.1
+0.5
+0.1
+0.2
pH
LB, pH10
+0.9
-0.2
+0.0
+0.2
+0.1
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