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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3102 and Ac3H11_3103 are separated by 439 nucleotides
Ac3H11_3103 and Ac3H11_3104 are separated by 36 nucleotides
Ac3H11_3104 and Ac3H11_3105 are separated by 288 nucleotides
Ac3H11_3105 and Ac3H11_3106 are separated by 205 nucleotides
Ac3H11_3102 - Lipoprotein, putative, at 1,357 to 1,980
_3102
Ac3H11_3103 - putative nuclease, at 2,420 to 2,857
_3103
Ac3H11_3104 - putative flagellin, at 2,894 to 4,597
_3104
Ac3H11_3105 - MFS general substrate transporter, at 4,886 to 6,157
_3105
Ac3H11_3106 - FIG00348192: hypothetical protein, at 6,363 to 7,928
_3106
Group
Condition
Ac3H11
_3102
Ac3H11
_3103
Ac3H11
_3104
Ac3H11
_3105
Ac3H11
_3106
stress
Tetracycline 0.0001 mg/ml
+0.0
-1.3
-0.2
-0.3
-0.1
stress
Sisomicin 0.0005 mg/ml
-1.8
+0.1
-0.1
+0.0
+0.0
stress
Cobalt chloride 0.32 mM
-1.5
+0.0
+0.1
+0.1
-0.1
stress
Cobalt chloride 0.16 mM
-1.8
+0.2
+0.1
+0.2
-0.1
stress
Zinc 1 mM
-1.3
+0.3
-0.0
+0.0
-0.2
carbon source
succinate (C)
-1.0
-0.3
+0.0
+0.1
+0.1
stress
Cobalt chloride 0.32 mM
-1.2
+0.1
+0.1
+0.1
-0.1
lb
LB
-1.5
+0.3
+0.4
+0.0
-0.1
pH
LB, pH10
-0.9
+0.4
-0.2
-0.1
-0.1
carbon source
L-Malic (C)
-1.6
+0.3
+0.2
+0.1
+0.2
stress
Phosphomycin 0.06 mg/ml
-1.1
+0.6
+0.0
+0.0
-0.4
carbon source
succinate (C)
-1.2
+0.4
+0.1
+0.1
-0.0
stress
copper (II) chloride 1 mM
-1.4
+0.2
+0.3
+0.1
+0.1
phage
phage 93.2
-0.9
-0.1
+0.0
-0.1
+0.3
lb
LB
-1.1
+0.3
+0.2
-0.0
-0.1
stress
Sisomicin 0.001 mg/ml
-1.0
+0.0
+0.3
-0.0
+0.2
carbon source
a-Ketoglutaric (C)
-1.0
+0.1
+0.2
+0.4
-0.2
pH
LB, pH10
-0.8
+0.5
-0.2
-0.5
+0.4
stress
Nickel (II) chloride 0.6 mM
-0.9
+0.2
+0.2
+0.2
-0.1
stress
Phosphomycin 0.02 mg/ml
-0.7
+0.4
-0.1
+0.2
-0.0
stress
copper (II) chloride 1 mM
-1.0
+0.1
+0.4
+0.1
+0.2
carbon source
succinate (C)
-0.8
+0.3
+0.2
+0.1
-0.1
lb
LB
-0.6
+0.3
+0.1
-0.1
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.0
+0.6
+0.1
+0.0
+0.3
motility
inner cut, R2A soft agar motility assay
-0.7
-0.2
+0.4
+0.1
+0.6
stress
nitrate 100 mM
-0.6
+0.2
+0.0
+0.4
+0.1
nitrogen source
Ammonium chloride (N)
-0.5
+0.7
+0.1
+0.1
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.8
+0.5
+1.0
+0.3
-0.6
stress
sodium fluoride 20 mM
-0.7
+0.3
+0.5
+0.2
+0.2
nitrogen source
D-Alanine (N)
+0.7
+1.1
+0.4
+0.2
+0.5
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