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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3078 and Ac3H11_3079 are separated by 22 nucleotides
Ac3H11_3079 and Ac3H11_3080 are separated by 16 nucleotides
Ac3H11_3080 and Ac3H11_3081 overlap by 4 nucleotides
Ac3H11_3081 and Ac3H11_3082 overlap by 4 nucleotides
Ac3H11_3078 - ATP-dependent DNA helicase UvrD/PcrA, at 100,532 to 102,562
_3078
Ac3H11_3079 - FIG01210206: hypothetical protein, at 102,585 to 103,190
_3079
Ac3H11_3080 - Flagellar motor protein, at 103,207 to 103,866
_3080
Ac3H11_3081 - Methyl-accepting chemotaxis protein, at 103,863 to 106,556
_3081
Ac3H11_3082 - conserved hypothetical protein, at 106,553 to 107,341
_3082
Group
Condition
Ac3H11
_3078
Ac3H11
_3079
Ac3H11
_3080
Ac3H11
_3081
Ac3H11
_3082
stress
copper (II) chloride 1 mM
+0.1
-2.4
-5.4
-3.4
N.D.
stress
Bacitracin 0.032 mg/ml
-0.5
-3.2
-2.0
-3.1
N.D.
stress
copper (II) chloride 1 mM
-0.1
-2.5
-4.2
-1.7
N.D.
stress
Cisplatin 0.005 mg/ml
-1.7
-1.0
-4.1
-1.6
N.D.
stress
Zinc 1 mM
-0.2
-0.8
-1.9
-4.8
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.7
-2.8
-0.6
-3.3
N.D.
stress
Cobalt chloride 0.16 mM
+0.2
-0.9
-3.1
-3.5
N.D.
lb
LB
-1.2
-1.8
-1.8
-2.3
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-0.4
-2.6
-0.7
-3.1
N.D.
lb
LB
-0.1
-1.0
-2.8
-2.6
N.D.
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.7
-0.8
-4.8
N.D.
stress
Bacitracin 0.016 mg/ml
-0.3
-0.6
-1.7
-3.8
N.D.
lb
LB
-0.4
-2.1
-3.1
-0.7
N.D.
lb
LB
-0.3
-0.8
-3.0
-2.2
N.D.
stress
nitrite 10 mM
-0.3
-0.0
-4.1
-1.8
N.D.
stress
Chlorate 20 mM
-0.6
-1.5
-2.7
-1.3
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
-1.7
-1.6
-2.0
N.D.
stress
Chlorite 0.1 mM
-0.1
+0.1
-1.2
-4.7
N.D.
stress
Sisomicin 0.0005 mg/ml
+0.1
-0.9
-1.7
-2.8
N.D.
stress
Bacitracin 0.008 mg/ml
-0.3
-0.9
-0.9
-3.1
N.D.
stress
Sisomicin 0.001 mg/ml
-0.1
-0.8
-1.2
-3.1
N.D.
stress
copper (II) chloride 2 mM
-0.1
-1.2
-2.1
-1.7
N.D.
carbon source
D-Gluconic Acid (C)
-0.2
-1.1
-2.0
-1.6
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.1
-2.0
-1.3
-1.3
N.D.
phage
phage 93.2
+0.2
-0.7
-2.0
-1.9
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
-1.9
+1.0
-3.1
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.3
-0.9
-0.4
-2.6
N.D.
pH
LB, pH10
+0.3
+1.8
-3.1
+0.3
N.D.
nitrogen source
L-Threonine (N)
+0.1
-1.2
-1.3
+3.5
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.5
-0.2
+2.3
+1.5
N.D.
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