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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_299 and Ac3H11_300 are separated by 91 nucleotides
Ac3H11_300 and Ac3H11_301 are separated by 36 nucleotides
Ac3H11_301 and Ac3H11_302 are separated by 66 nucleotides
Ac3H11_302 and Ac3H11_303 are separated by 77 nucleotides
Ac3H11_299 - EAL domain protein, at 120,276 to 121,556
_299
Ac3H11_300 - Tricarboxylate transport protein TctC, at 121,648 to 122,637
_300
Ac3H11_301 - putative exported protein, at 122,674 to 123,636
_301
Ac3H11_302 - Tyrosine recombinase XerD, at 123,703 to 124,602
_302
Ac3H11_303 - Tricarboxylate transport protein TctC, at 124,680 to 125,645
_303
Group
Condition
Ac3H11
_299
Ac3H11
_300
Ac3H11
_301
Ac3H11
_302
Ac3H11
_303
lb
LB
-0.8
-0.0
+0.0
N.D.
+0.0
pH
LB, pH10
-0.6
+0.1
-0.2
N.D.
-0.0
stress
Dimethyl Sulfoxide 6 vol%
-0.4
-0.1
-0.0
N.D.
-0.1
stress
Chloramphenicol 0.001 mg/ml
-0.3
+0.0
-0.1
N.D.
-0.1
stress
Cobalt chloride 0.32 mM
-0.5
+0.0
+0.1
N.D.
-0.0
motility
inner cut, R2A soft agar motility assay
-0.7
-0.0
+0.3
N.D.
+0.1
carbon source
succinate (C)
-0.4
+0.1
+0.0
N.D.
-0.1
stress
Chlorite 0.1 mM
-0.6
+0.1
+0.1
N.D.
+0.2
carbon source
D-Lactate (C)
-0.3
+0.1
+0.1
N.D.
-0.0
nitrogen source
L-Isoleucine (N)
-0.4
+0.0
+0.3
N.D.
+0.0
phage
phage 93.1
-0.5
+0.1
+0.1
N.D.
+0.4
stress
Sisomicin 0.004 mg/ml
-0.2
-0.0
+0.1
N.D.
+0.2
carbon source
D-Ribose (C)
-0.3
+0.1
+0.0
N.D.
+0.2
stress
Phosphomycin 0.02 mg/ml
+0.3
+0.1
+0.0
N.D.
-0.2
nitrogen source
L-Alanine (N)
-0.4
+0.1
+0.2
N.D.
+0.2
phage
phage 93.1
-0.1
-0.1
-0.0
N.D.
+0.4
stress
perchlorate 10 mM
+0.3
+0.1
+0.0
N.D.
-0.2
nitrogen source
Ammonium chloride (N)
+0.2
-0.2
+0.2
N.D.
+0.1
stress
copper (II) chloride 2 mM
+0.4
+0.2
-0.1
N.D.
+0.0
carbon source
D-Gluconic Acid (C)
-0.3
+0.2
+0.1
N.D.
+0.5
carbon source
a-Ketoglutaric (C)
+0.2
-0.0
+0.1
N.D.
+0.2
stress
Ceftazidime 0.01 mg/ml
+0.4
-0.1
+0.1
N.D.
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.5
+0.0
+0.1
N.D.
-0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.2
-0.1
N.D.
+0.4
stress
Cisplatin 0.0025 mg/ml
+0.4
+0.0
+0.1
N.D.
+0.0
carbon source
pyruvate (C)
+0.1
+0.1
+0.1
N.D.
+0.4
phage
phage 93.2
+0.1
+0.5
-0.2
N.D.
+0.3
carbon source
D-Glucose (C)
+0.2
-0.0
+0.1
N.D.
+0.4
carbon source
D-Glucose (C)
+0.4
+0.0
+0.0
N.D.
+0.3
carbon source
D-Gluconic Acid (C)
+0.2
+0.0
+0.2
N.D.
+0.7
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