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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3004 and Ac3H11_3005 are separated by 51 nucleotides
Ac3H11_3005 and Ac3H11_3006 are separated by 150 nucleotides
Ac3H11_3006 and Ac3H11_3007 are separated by 201 nucleotides
Ac3H11_3007 and Ac3H11_3008 are separated by 792 nucleotides
Ac3H11_3004 - UPF0225 protein YchJ, at 24,568 to 24,927
_3004
Ac3H11_3005 - Putative phosphatase YieH, at 24,979 to 25,632
_3005
Ac3H11_3006 - lipoprotein, putative, at 25,783 to 27,147
_3006
Ac3H11_3007 - Glutathione S-transferase (EC 2.5.1.18), at 27,349 to 28,023
_3007
Ac3H11_3008 - Transcriptional regulator, AraC family, at 28,816 to 29,904
_3008
Group
Condition
Ac3H11
_3004
Ac3H11
_3005
Ac3H11
_3006
Ac3H11
_3007
Ac3H11
_3008
nitrogen source
L-Leucine (N)
+0.3
-0.0
-0.0
-0.3
-6.0
motility
inner cut, R2A soft agar motility assay
-1.8
-0.0
-0.1
-0.3
+0.0
stress
Paraquat dichloride 0.01 mg/ml
-2.3
-0.3
-0.1
-0.5
+1.1
carbon source
pyruvate (C)
-2.0
+0.0
+0.1
-0.1
-0.1
nitrogen source
D-Alanine (N)
-2.4
+0.1
+0.3
-0.4
+0.4
nitrogen source
Ammonium chloride (N)
-1.8
-0.7
-0.3
+0.5
+0.4
temperature
LB 30C
-0.9
+0.0
+0.2
+0.2
-1.1
stress
Fusidic 0.001 mg/ml
-1.8
+0.0
-0.3
+0.3
+0.7
nitrogen source
Uridine (N)
-1.6
+0.1
-0.0
+0.0
+0.4
pH
LB, pH10
-0.9
-0.5
-0.7
-0.2
+1.3
stress
Sisomicin 0.0005 mg/ml
-1.4
+0.0
-0.0
-0.1
+0.6
stress
Nickel (II) chloride 0.8 mM
-1.4
+0.8
+0.4
-0.4
-0.2
lb
LB
-0.6
-0.3
-0.6
+0.2
+0.7
stress
copper (II) chloride 2 mM
-0.3
-0.8
-1.3
+0.5
+1.7
stress
Nickel (II) chloride 0.6 mM
-1.7
+0.2
+0.6
-0.1
+0.8
carbon source
a-Ketoglutaric (C)
+0.4
-0.3
+0.5
-0.6
-0.3
stress
copper (II) chloride 1 mM
-0.9
-0.3
-0.2
+0.4
+0.8
stress
Zinc 1 mM
+0.5
-0.5
-0.6
-0.2
+1.1
stress
Cisplatin 0.005 mg/ml
-0.5
+0.3
+0.4
-0.1
+1.3
carbon source
a-Ketoglutaric (C)
+0.5
+0.2
+0.7
+0.5
-0.6
stress
Bacitracin 0.016 mg/ml
-0.7
+0.4
+0.8
+0.4
+0.5
stress
perchlorate 10 mM
+0.8
+0.1
-0.3
-0.1
+1.1
stress
Cisplatin 0.0025 mg/ml
+0.6
+0.1
+0.3
-0.3
+1.0
carbon source
succinate (C)
+1.8
+0.2
+0.2
-0.2
-0.2
stress
Sisomicin 0.001 mg/ml
+1.0
+0.0
+0.2
-0.0
+1.1
stress
Cobalt chloride 0.4 mM
+1.0
+0.8
+0.8
+0.2
-0.3
stress
Phosphomycin 0.06 mg/ml
+1.2
-0.1
+0.1
+0.3
+1.1
stress
Aluminum chloride 2 mM
+1.1
+0.5
+1.5
+0.5
+0.6
stress
Bacitracin 0.032 mg/ml
+1.2
+0.6
+1.6
+0.3
+0.6
stress
Aluminum chloride 4 mM
+1.2
+1.0
+1.9
+0.3
+0.6
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