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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_298 and Ac3H11_299 are separated by 102 nucleotides
Ac3H11_299 and Ac3H11_300 are separated by 91 nucleotides
Ac3H11_300 and Ac3H11_301 are separated by 36 nucleotides
Ac3H11_301 and Ac3H11_302 are separated by 66 nucleotides
Ac3H11_298 - EAL domain protein, at 118,905 to 120,173
_298
Ac3H11_299 - EAL domain protein, at 120,276 to 121,556
_299
Ac3H11_300 - Tricarboxylate transport protein TctC, at 121,648 to 122,637
_300
Ac3H11_301 - putative exported protein, at 122,674 to 123,636
_301
Ac3H11_302 - Tyrosine recombinase XerD, at 123,703 to 124,602
_302
Group
Condition
Ac3H11
_298
Ac3H11
_299
Ac3H11
_300
Ac3H11
_301
Ac3H11
_302
lb
LB
-0.3
-0.8
-0.0
+0.0
N.D.
motility
inner cut, R2A soft agar motility assay
-0.3
-0.7
-0.0
+0.3
N.D.
motility
inner cut, R2A soft agar motility assay
-0.7
-0.1
+0.0
+0.0
N.D.
nitrogen source
L-Histidine (N)
-0.5
+0.0
-0.1
-0.0
N.D.
stress
Chlorite 0.1 mM
-0.2
-0.6
+0.1
+0.1
N.D.
nitrogen source
L-Proline (N)
-0.4
-0.1
+0.1
-0.0
N.D.
stress
Cobalt chloride 0.32 mM
-0.1
-0.5
+0.0
+0.1
N.D.
pH
LB, pH10
+0.3
-0.6
+0.1
-0.2
N.D.
phage
phage 93.1
+0.1
-0.5
+0.1
+0.1
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-0.4
+0.1
+0.1
-0.0
N.D.
stress
Cisplatin 0.005 mg/ml
-0.5
+0.0
+0.2
+0.1
N.D.
carbon source
succinate (C)
+0.2
-0.4
+0.1
+0.0
N.D.
carbon source
D-Lactate (C)
+0.2
-0.3
+0.1
+0.1
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
-0.4
+0.0
+0.3
N.D.
stress
perchlorate 10 mM
-0.3
+0.3
+0.1
+0.0
N.D.
stress
copper (II) chloride 2 mM
-0.2
+0.4
+0.2
-0.1
N.D.
stress
perchlorate 25 mM
-0.2
+0.2
+0.1
+0.1
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.3
+0.4
+0.0
+0.1
N.D.
stress
Ceftazidime 0.01 mg/ml
-0.1
+0.4
-0.1
+0.1
N.D.
nitrogen source
L-Alanine (N)
+0.4
-0.4
+0.1
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
+0.4
-0.3
+0.2
+0.1
N.D.
phage
phage 93.2
+0.1
+0.1
+0.5
-0.2
N.D.
stress
copper (II) chloride 1 mM
+0.1
+0.1
+0.2
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
+0.0
+0.2
N.D.
nitrogen source
D-Alanine (N)
+0.6
+0.1
-0.0
+0.1
N.D.
stress
Cobalt chloride 0.4 mM
+0.4
+0.0
+0.3
+0.0
N.D.
carbon source
succinate (C)
+0.4
+0.1
+0.2
+0.1
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.5
+0.0
+0.1
N.D.
carbon source
succinate (C)
+0.5
+0.2
+0.1
+0.1
N.D.
nitrogen source
Ammonium chloride (N)
+1.0
+0.2
-0.2
+0.2
N.D.
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