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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_2990 and Ac3H11_2991 are separated by 38 nucleotides
Ac3H11_2991 and Ac3H11_2992 are separated by 53 nucleotides
Ac3H11_2992 and Ac3H11_2993 are separated by 44 nucleotides
Ac3H11_2993 and Ac3H11_2994 are separated by 58 nucleotides
Ac3H11_2990 - Phenylacetic acid degradation protein PaaD, thioesterase, at 7,573 to 7,911
_2990
Ac3H11_2991 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
(from data)
, at 7,950 to 9,140
_2991
Ac3H11_2992 - Carbonic anhydrase (EC 4.2.1.1), at 9,194 to 9,853
_2992
Ac3H11_2993 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 9,898 to 11,703
_2993
Ac3H11_2994 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
(from data)
, at 11,762 to 12,955
_2994
Group
Condition
Ac3H11
_2990
Ac3H11
_2991
Ac3H11
_2992
Ac3H11
_2993
Ac3H11
_2994
nitrogen source
L-Leucine (N)
-4.7
-6.2
-2.1
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
-1.3
-1.3
-5.0
-1.9
-3.0
nitrogen source
L-Threonine (N)
-0.9
-0.5
-2.2
-0.8
-1.9
nitrogen source
L-Alanine (N)
-2.3
-0.0
-1.1
-0.1
+0.2
lb
LB
-1.0
+0.0
-2.2
+0.1
+0.7
temperature
LB 30C
-0.3
-1.3
-0.2
+0.1
-0.5
stress
Phosphomycin 0.06 mg/ml
-0.6
+0.2
-2.4
+0.2
+0.7
stress
syringaldehyde 2.5 mM
-0.7
-1.2
+0.4
+0.1
-0.4
stress
copper (II) chloride 1 mM
+0.3
+0.4
-2.8
+0.2
+0.4
stress
Bacitracin 0.008 mg/ml
+0.3
-0.0
-2.4
+0.2
+0.6
stress
nitrite 10 mM
-0.2
-0.0
-2.0
+0.2
+0.8
nitrogen source
D-Alanine (N)
-0.1
+0.3
-1.3
-0.2
+0.3
stress
Zinc 1 mM
+0.2
+0.1
-2.1
+0.2
+0.6
stress
A22 0.025 mg/ml
-0.3
-0.5
-0.9
+0.1
+0.6
stress
Phosphomycin 0.02 mg/ml
-0.2
+0.1
-1.6
+0.2
+0.7
stress
Chlorite 0.1 mM
-0.1
+0.2
-1.9
+0.2
+0.8
stress
Nickel (II) chloride 0.6 mM
+0.0
+0.2
-1.8
+0.0
+0.8
stress
Sisomicin 0.001 mg/ml
+0.5
+0.0
-1.9
+0.1
+0.6
stress
Cisplatin 0.0025 mg/ml
+0.4
+0.1
-1.8
+0.1
+0.4
lb
LB
+0.3
-0.0
-1.6
+0.3
+0.4
stress
Cisplatin 0.005 mg/ml
+0.5
+0.1
-1.8
+0.0
+0.6
stress
Aluminum chloride 2 mM
+0.4
-0.1
-1.3
+0.1
+0.3
pH
LB, pH10
-0.7
-0.9
+0.9
+0.2
+0.3
stress
perchlorate 25 mM
+0.5
+0.3
-1.9
+0.3
+0.7
lb
LB
+1.0
-0.0
-1.9
+0.3
+0.9
stress
Paraquat dichloride 0.01 mg/ml
+0.8
-0.0
-1.7
+0.0
+1.2
stress
Bacitracin 0.032 mg/ml
+0.8
+0.0
-1.1
+0.2
+0.5
pH
LB, pH10
-0.1
-0.7
+0.7
+0.1
+0.8
stress
perchlorate 10 mM
+0.8
+0.2
-1.2
+0.2
+0.9
stress
copper (II) chloride 2 mM
+0.4
+0.4
-0.8
+0.2
+1.1
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