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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2955 and Ac3H11_2956 are separated by 76 nucleotides
Ac3H11_2956 and Ac3H11_2957 are separated by 101 nucleotides
Ac3H11_2957 and Ac3H11_2958 are separated by 96 nucleotides
Ac3H11_2958 and Ac3H11_2959 are separated by 217 nucleotides
Ac3H11_2955 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 1,274,081 to 1,275,538
_2955
Ac3H11_2956 - Dihydropyrimidinase (EC 3.5.2.2)
(from data)
, at 1,275,615 to 1,277,069
_2956
Ac3H11_2957 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 1,277,171 to 1,278,466
_2957
Ac3H11_2958 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,278,563 to 1,280,086
_2958
Ac3H11_2959 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,280,304 to 1,282,370
_2959
Group
Condition
Ac3H11
_2955
Ac3H11
_2956
Ac3H11
_2957
Ac3H11
_2958
Ac3H11
_2959
nitrogen source
Uridine (N)
-3.4
-5.5
-3.7
-0.4
-0.7
carbon source
D-Glucose (C)
-0.6
-0.5
-0.4
-0.2
-0.4
carbon source
D-Gluconic Acid (C)
-0.5
-0.7
-0.7
+0.3
-0.5
carbon source
D-Gluconic Acid (C)
-0.9
-0.9
+0.1
+0.0
-0.4
carbon source
D-Lactate (C)
-0.2
-0.3
-0.6
-0.3
-0.6
temperature
LB 30C
-0.2
-0.3
-0.4
-0.4
-0.6
carbon source
D-Glucose (C)
-0.5
-0.5
-0.2
-0.2
-0.5
carbon source
succinate (C)
-0.4
-0.2
-0.4
-0.3
-0.5
carbon source
Tween 20 (C)
-0.6
-0.2
-0.3
-0.5
-0.3
carbon source
D,L-Lactate (C)
-0.4
-0.3
-0.2
-0.4
-0.5
carbon source
L-Arabinose (C)
-0.5
-0.5
-0.3
-0.1
-0.4
nitrogen source
L-Leucine (N)
-0.3
+0.0
-0.0
-0.4
-1.0
carbon source
L-Arabinose (C)
-0.5
-0.1
-0.3
-0.5
-0.4
carbon source
D-Fructose (C)
-0.4
-0.4
-0.2
-0.1
-0.5
carbon source
L-Glutamine (C)
-0.4
-0.2
-0.5
-0.2
-0.3
carbon source
L-Arabinose (C)
-0.4
-0.3
-0.4
-0.1
-0.3
carbon source
D,L-Lactate (C)
-0.1
-0.3
-0.3
-0.3
-0.6
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-0.6
-0.1
-0.7
carbon source
D-Ribose (C)
-0.3
-0.5
-0.4
-0.0
-0.4
temperature
LB 23C
-0.3
-0.3
-0.1
-0.4
-0.4
temperature
LB 23C
-0.4
-0.2
+0.0
-0.4
-0.6
temperature
LB 30C
-0.1
-0.2
-0.5
-0.3
-0.4
stress
perchlorate 10 mM
-0.3
-0.1
-0.5
-0.4
-0.2
pH
LB, pH10
+0.2
-0.2
-0.5
-0.4
-0.3
phage
phage 93.1
-0.3
-0.2
+0.3
-0.3
-0.6
pH
LB, pH10
-0.2
-0.2
+0.4
-0.4
-0.6
motility
inner cut, R2A soft agar motility assay
-0.5
+0.1
+0.5
-0.2
-0.5
motility
inner cut, R2A soft agar motility assay
-0.6
+0.4
-0.3
+0.1
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.3
+0.0
+0.3
-1.0
stress
Sisomicin 0.001 mg/ml
-0.4
+0.4
+0.5
+0.1
-0.3
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