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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2936 and Ac3H11_2937 are separated by 28 nucleotides
Ac3H11_2937 and Ac3H11_2938 are separated by 160 nucleotides
Ac3H11_2938 and Ac3H11_2939 are separated by 29 nucleotides
Ac3H11_2939 and Ac3H11_2940 are separated by 19 nucleotides
Ac3H11_2936 - Fructokinase (EC 2.7.1.4), at 1,254,425 to 1,255,438
_2936
Ac3H11_2937 - Xylulose kinase (EC 2.7.1.17), at 1,255,467 to 1,257,014
_2937
Ac3H11_2938 - Transcriptional regulator of various polyols utilization, AraC family, at 1,257,175 to 1,258,107
_2938
Ac3H11_2939 - D-arabinitol 4-dehydrogenase (EC 1.1.1.11), at 1,258,137 to 1,259,528
_2939
Ac3H11_2940 - D-sorbitol 2-dehydrogenase (EC 1.1.1.14)
(from data)
, at 1,259,548 to 1,260,282
_2940
Group
Condition
Ac3H11
_2936
Ac3H11
_2937
Ac3H11
_2938
Ac3H11
_2939
Ac3H11
_2940
carbon source
D-Sorbitol (C)
+0.7
+0.6
-6.4
-0.3
-4.4
lb
LB
-0.0
-0.8
-0.5
-0.3
-0.4
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.8
-1.4
+0.0
+0.1
pH
LB, pH10
+0.1
-0.4
-0.9
-0.6
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
-0.2
-0.5
+0.1
-0.6
pH
LB, pH5
-0.5
-0.5
-0.5
+0.1
-0.1
stress
Zinc 1 mM
+0.1
-0.6
+0.1
-0.0
-0.7
carbon source
a-Ketoglutaric (C)
-0.1
+0.4
-2.9
-0.1
+1.7
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.3
-0.9
-0.1
-0.3
phage
phage 93.2
+0.2
+0.2
-0.7
-0.2
+0.2
stress
Cephalothin 0.005 mg/ml
+0.1
+0.3
-0.4
+0.2
-0.5
carbon source
D,L-Lactate (C)
-0.2
+0.3
-0.5
+0.1
+0.2
stress
Nickel (II) chloride 0.6 mM
-0.4
-0.4
+0.5
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
+0.1
+0.1
-0.6
-0.1
+0.5
carbon source
pyruvate (C)
-0.3
+0.3
-0.5
+0.0
+0.6
stress
nitrite 10 mM
-0.3
+0.5
-0.3
+0.3
-0.1
carbon source
succinate (C)
-0.3
+0.4
-0.6
+0.2
+0.4
carbon source
D-Glucose (C)
-0.5
+0.0
+0.1
+0.5
+0.3
nitrogen source
L-Isoleucine (N)
-0.5
+0.4
+0.4
+0.0
+0.1
lb
LB
-0.1
+0.2
+0.9
+0.1
-0.4
stress
Cisplatin 0.005 mg/ml
+0.5
-0.4
+0.7
+0.2
-0.1
nitrogen source
Ammonium chloride (N)
+0.1
-0.1
+0.9
+0.3
-0.3
nitrogen source
L-Alanine (N)
-0.3
-0.3
+1.2
-0.0
+0.4
carbon source
succinate (C)
-0.1
+0.2
+0.4
+0.2
+0.4
stress
Chlorite 0.1 mM
+0.1
-0.9
+1.4
+0.1
+0.6
carbon source
D-Gluconic Acid (C)
-0.3
+0.3
+0.4
+0.2
+0.9
carbon source
D-Gluconic Acid (C)
-0.0
+0.3
+0.3
-0.1
+1.1
carbon source
D-Ribose (C)
-0.2
+0.2
-0.2
+1.9
-0.0
carbon source
D-Ribose (C)
-0.3
+0.3
+0.3
+1.6
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.7
-0.4
+0.3
+1.6
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