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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2927 and Ac3H11_2928 are separated by 125 nucleotides
Ac3H11_2928 and Ac3H11_2929 are separated by 2 nucleotides
Ac3H11_2929 and Ac3H11_2930 are separated by 30 nucleotides
Ac3H11_2930 and Ac3H11_2931 are separated by 192 nucleotides
Ac3H11_2927 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,245,074 to 1,245,541
_2927
Ac3H11_2928 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 1,245,667 to 1,246,977
_2928
Ac3H11_2929 - Probable hydrolase protein (EC 3.-.-.-), at 1,246,980 to 1,247,798
_2929
Ac3H11_2930 - putative membrane protein, at 1,247,829 to 1,249,085
_2930
Ac3H11_2931 - putative transmembrane protein, at 1,249,278 to 1,249,613
_2931
Group
Condition
Ac3H11
_2927
Ac3H11
_2928
Ac3H11
_2929
Ac3H11
_2930
Ac3H11
_2931
nitrogen source
Uridine (N)
-3.1
+0.5
-0.1
+0.2
-0.2
nitrogen source
L-Leucine (N)
-1.8
-0.1
-0.5
+0.0
-0.0
nitrogen source
L-Histidine (N)
-1.5
-0.2
+0.3
-0.3
-0.0
nitrogen source
L-Isoleucine (N)
-0.8
-0.0
-0.4
+0.1
-0.2
nitrogen source
L-Glutamine (N)
-1.2
+0.1
-0.1
+0.1
-0.0
motility
inner cut, R2A soft agar motility assay
-0.5
+0.3
-0.6
+0.0
-0.2
nitrogen source
Ammonium chloride (N)
-1.8
-0.3
+0.7
+0.5
-0.2
carbon source
succinate (C)
+0.1
+0.3
-0.8
-0.1
-0.3
carbon source
D-Galactose (C)
-1.1
+0.2
-0.1
+0.3
-0.0
nitrogen source
L-Threonine (N)
-1.8
+0.6
+0.4
+0.2
+0.0
carbon source
a-Ketoglutaric (C)
+0.4
+0.1
-0.6
-0.0
-0.3
stress
Cobalt chloride 0.32 mM
-0.7
+0.1
+0.5
+0.1
-0.3
stress
Cisplatin 0.005 mg/ml
+1.1
-0.5
+0.1
-0.5
-0.1
nitrogen source
L-Alanine (N)
-0.5
+0.3
+0.4
-0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
+1.3
+0.0
-0.5
-0.2
-0.3
stress
Chlorite 0.1 mM
+1.3
-0.2
-0.3
-0.1
-0.2
stress
A22 0.025 mg/ml
+0.8
-0.2
+0.3
+0.1
-0.2
carbon source
D-Gluconic Acid (C)
+0.9
+0.2
+0.1
-0.4
+0.2
lb
LB
+0.9
-0.1
+0.7
-0.4
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.9
-0.2
-0.1
+0.4
+0.1
stress
D-Cycloserine 0.05 mg/ml
+0.3
+1.0
-0.1
+0.2
-0.3
pH
LB, pH10
+0.3
+0.0
+0.8
+0.4
-0.2
stress
copper (II) chloride 2 mM
+0.1
+0.5
+0.7
+0.4
-0.4
stress
Fusidic 0.001 mg/ml
+0.6
+0.2
+0.6
-0.1
+0.0
carbon source
a-Ketoglutaric (C)
+0.7
-0.1
+0.3
+0.4
+0.2
lb
LB
+1.3
+0.3
-0.1
-0.1
+0.2
stress
Zinc 1 mM
+1.1
+0.2
+0.5
+0.0
+0.0
stress
perchlorate 10 mM
+1.1
+0.4
+0.6
+0.1
-0.3
stress
Sisomicin 0.001 mg/ml
+1.4
+0.3
+0.5
-0.2
-0.0
stress
perchlorate 25 mM
+1.0
+0.6
+0.1
+0.1
+0.1
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