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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_2908 and Ac3H11_2909 overlap by 4 nucleotides
Ac3H11_2909 and Ac3H11_2910 are separated by 22 nucleotides
Ac3H11_2910 and Ac3H11_2911 are separated by 11 nucleotides
Ac3H11_2911 and Ac3H11_2912 are separated by 166 nucleotides
Ac3H11_2908 - ABC transporter ATP-binding protein, at 1,220,641 to 1,222,281
_2908
Ac3H11_2909 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 1,222,278 to 1,223,324
_2909
Ac3H11_2910 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 1,223,347 to 1,224,390
_2910
Ac3H11_2911 - ABC transporter, periplasmic substrate-binding protein, at 1,224,402 to 1,226,171
_2911
Ac3H11_2912 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 1,226,338 to 1,227,138
_2912
Group
Condition
Ac3H11
_2908
Ac3H11
_2909
Ac3H11
_2910
Ac3H11
_2911
Ac3H11
_2912
stress
Sisomicin 0.004 mg/ml
-0.6
-0.7
-0.8
-0.8
N.D.
stress
Sisomicin 0.0005 mg/ml
-0.7
-0.7
-0.6
-0.5
N.D.
carbon source
L-Arabinose (C)
-0.8
-0.2
-0.2
-0.3
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.9
+0.4
-0.3
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.8
+0.3
-0.4
+0.3
N.D.
stress
copper (II) chloride 2 mM
+0.5
+0.3
+0.3
+0.3
N.D.
stress
sodium fluoride 20 mM
+0.6
+0.3
+0.2
+0.2
N.D.
stress
Cobalt chloride 0.16 mM
+0.4
+0.3
+0.4
+0.2
N.D.
stress
Cobalt chloride 0.32 mM
+0.4
+0.3
+0.3
+0.3
N.D.
stress
Bacitracin 0.008 mg/ml
+0.6
+0.3
+0.2
+0.3
N.D.
stress
Zinc 1 mM
+0.4
+0.5
+0.2
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
+0.3
+0.4
+0.4
+0.3
N.D.
lb
LB
+0.0
+0.4
+0.5
+0.5
N.D.
stress
Aluminum chloride 4 mM
+0.2
+0.5
+0.4
+0.5
N.D.
stress
copper (II) chloride 1 mM
+0.3
+0.4
+0.4
+0.4
N.D.
nitrogen source
L-Threonine (N)
+0.1
+0.4
+0.5
+0.5
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
+0.4
+0.5
+0.3
N.D.
stress
Aluminum chloride 2 mM
+0.5
+0.4
+0.3
+0.4
N.D.
stress
Cisplatin 0.005 mg/ml
+0.9
+0.2
+0.2
+0.3
N.D.
stress
Cobalt chloride 0.32 mM
+0.3
+0.4
+0.4
+0.5
N.D.
lb
LB
+0.6
+0.4
+0.3
+0.3
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.4
+0.4
+0.4
+0.4
N.D.
carbon source
a-Ketoglutaric (C)
+0.4
+0.3
+0.7
+0.4
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
+0.7
+0.6
+0.4
N.D.
pH
LB, pH10
+0.4
+0.4
+0.6
+0.4
N.D.
nitrogen source
D-Alanine (N)
+0.8
+0.5
+0.4
+0.3
N.D.
carbon source
succinate (C)
+0.4
+0.4
+0.6
+0.7
N.D.
carbon source
succinate (C)
+0.4
+0.7
+0.6
+0.5
N.D.
nitrogen source
Ammonium chloride (N)
+0.7
+0.9
+0.9
+0.9
N.D.
nitrogen source
L-tyrosine (N)
+1.9
+2.1
+2.1
+2.1
N.D.
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