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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2906 and Ac3H11_2907 are separated by 291 nucleotides
Ac3H11_2907 and Ac3H11_2908 are separated by 134 nucleotides
Ac3H11_2908 and Ac3H11_2909 overlap by 4 nucleotides
Ac3H11_2909 and Ac3H11_2910 are separated by 22 nucleotides
Ac3H11_2906 - hypothetical protein, at 1,218,953 to 1,219,615
_2906
Ac3H11_2907 - Outer membrane lipoprotein blc precursor, at 1,219,907 to 1,220,506
_2907
Ac3H11_2908 - ABC transporter ATP-binding protein, at 1,220,641 to 1,222,281
_2908
Ac3H11_2909 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 1,222,278 to 1,223,324
_2909
Ac3H11_2910 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 1,223,347 to 1,224,390
_2910
Group
Condition
Ac3H11
_2906
Ac3H11
_2907
Ac3H11
_2908
Ac3H11
_2909
Ac3H11
_2910
stress
Sisomicin 0.004 mg/ml
+0.0
+0.0
-0.6
-0.7
-0.8
stress
Sisomicin 0.0005 mg/ml
+0.4
+0.1
-0.7
-0.7
-0.6
phage
phage 93.1
-0.7
-0.2
-0.1
-0.2
-0.1
stress
D-Cycloserine 0.05 mg/ml
-0.6
-0.1
-0.9
+0.4
-0.3
carbon source
propionate (C)
-0.4
-0.4
-0.4
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
-0.8
-0.1
-0.3
-0.2
+0.1
motility
inner cut, R2A soft agar motility assay
-0.1
+0.3
-0.8
+0.3
-0.4
stress
Paraquat dichloride 0.01 mg/ml
-1.6
+0.5
-0.1
+0.4
+0.3
stress
Phosphomycin 0.02 mg/ml
-1.0
+0.1
+0.4
+0.3
+0.2
stress
perchlorate 25 mM
-0.7
+0.1
+0.4
+0.4
+0.1
lb
LB
-0.6
+0.2
+0.2
+0.4
+0.2
stress
copper (II) chloride 1 mM
-0.7
-0.0
+0.3
+0.4
+0.4
stress
sodium fluoride 20 mM
-0.4
-0.1
+0.6
+0.3
+0.2
carbon source
a-Ketoglutaric (C)
-0.5
-0.2
+0.4
+0.3
+0.7
stress
Aluminum chloride 2 mM
-0.5
+0.1
+0.5
+0.4
+0.3
carbon source
succinate (C)
-0.5
-0.3
+0.4
+0.4
+0.6
stress
Cisplatin 0.005 mg/ml
-0.1
+0.1
+0.9
+0.2
+0.2
stress
copper (II) chloride 2 mM
+0.5
-0.1
+0.5
+0.3
+0.3
carbon source
succinate (C)
-0.2
-0.2
+0.4
+0.7
+0.6
stress
Cisplatin 0.0025 mg/ml
+0.3
-0.1
+0.4
+0.4
+0.4
lb
LB
+0.6
-0.0
+0.0
+0.4
+0.5
nitrogen source
Uridine (N)
+0.5
+0.3
-0.0
+0.4
+0.4
carbon source
D-Gluconic Acid (C)
+0.3
+0.0
+0.2
+0.7
+0.6
stress
Fusidic 0.001 mg/ml
+0.9
-0.0
+0.3
+0.4
+0.3
lb
LB
+0.9
-0.2
+0.6
+0.4
+0.3
stress
Bacitracin 0.008 mg/ml
+0.9
+0.0
+0.6
+0.3
+0.2
nitrogen source
D-Alanine (N)
+0.7
+0.0
+0.8
+0.5
+0.4
pH
LB, pH10
+0.9
+0.2
+0.4
+0.4
+0.6
nitrogen source
Ammonium chloride (N)
+1.0
+0.4
+0.7
+0.9
+0.9
nitrogen source
L-tyrosine (N)
+0.7
-0.1
+1.9
+2.1
+2.1
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