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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2889 and Ac3H11_2890 are separated by 605 nucleotides
Ac3H11_2890 and Ac3H11_2891 are separated by 3 nucleotides
Ac3H11_2891 and Ac3H11_2892 are separated by 25 nucleotides
Ac3H11_2892 and Ac3H11_2893 are separated by 76 nucleotides
Ac3H11_2889 - Possible NADH oxidoreductase, at 1,199,843 to 1,200,994
_2889
Ac3H11_2890 - Thioredoxin-like protein clustered with PA0057, at 1,201,600 to 1,202,262
_2890
Ac3H11_2891 - hypothetical protein, at 1,202,266 to 1,202,541
_2891
Ac3H11_2892 - Possible membrane protein, at 1,202,567 to 1,203,013
_2892
Ac3H11_2893 - Metallo-beta-lactamase superfamily protein PA0057, at 1,203,090 to 1,203,956
_2893
Group
Condition
Ac3H11
_2889
Ac3H11
_2890
Ac3H11
_2891
Ac3H11
_2892
Ac3H11
_2893
nitrogen source
D-Alanine (N)
+0.1
-0.7
-1.6
-1.0
+0.0
stress
Zinc 1 mM
-0.3
-0.2
-2.3
+0.0
-0.3
stress
Chlorite 0.1 mM
-0.3
+0.2
-1.4
-1.5
+0.0
phage
phage 93.2
+0.1
-0.8
-1.6
-0.5
-0.3
stress
Cobalt chloride 0.4 mM
+0.1
-0.8
-2.0
+0.1
-0.2
stress
nitrate 100 mM
-0.1
-0.6
-1.9
+0.0
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
-0.9
-1.4
-0.2
-0.2
lb
LB
-0.2
-0.1
-1.8
-0.6
+0.1
stress
copper (II) chloride 1 mM
+0.1
-0.2
-2.2
-0.0
+0.1
lb
LB
+0.4
-0.6
-1.0
-0.6
-0.4
nitrogen source
L-Arginine (N)
+0.2
+0.1
-1.9
-0.2
-0.3
lb
LB
+0.0
-0.5
-1.3
-0.4
+0.3
stress
Phosphomycin 0.06 mg/ml
+0.1
+0.4
-1.8
-0.6
+0.0
phage
phage 93.1
-0.1
-0.3
-1.6
-0.0
+0.3
carbon source
succinate (C)
+0.1
+0.3
-1.7
-0.0
-0.2
stress
Dimethyl Sulfoxide 6 vol%
+0.3
+0.6
-2.1
-0.1
-0.0
pH
LB, pH10
-0.3
+0.6
-0.6
-0.5
-0.4
motility
inner cut, R2A soft agar motility assay
+0.1
+0.6
-1.6
-0.4
+0.3
nitrogen source
L-Alanine (N)
+0.9
-0.3
-0.6
+0.1
-0.8
stress
perchlorate 25 mM
-0.4
+0.5
-0.7
-0.3
+0.3
nitrogen source
L-Threonine (N)
+0.4
+0.6
-1.4
+0.5
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.8
+1.4
+0.1
-0.0
nitrogen source
Ammonium chloride (N)
+0.2
+0.6
-1.1
+0.5
+0.4
carbon source
a-Ketoglutaric (C)
-0.3
-0.9
+1.1
+0.4
+0.4
carbon source
D-Fructose (C)
-0.2
-0.4
+1.1
+0.8
-0.3
carbon source
a-Ketoglutaric (C)
+0.2
-0.5
+1.5
+0.2
-0.0
pH
LB, pH10
-0.2
-0.4
+1.0
+0.7
+0.2
stress
Cisplatin 0.005 mg/ml
-0.1
+0.5
+0.7
+0.8
+0.1
lb
LB
+0.0
+0.7
+1.6
-0.3
+0.3
carbon source
D-Gluconic Acid (C)
+0.1
-0.3
+3.3
-0.0
-0.2
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