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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2855 and Ac3H11_2856 overlap by 4 nucleotides
Ac3H11_2856 and Ac3H11_2857 are separated by 262 nucleotides
Ac3H11_2857 and Ac3H11_2858 are separated by 132 nucleotides
Ac3H11_2858 and Ac3H11_2859 are separated by 25 nucleotides
Ac3H11_2855 - conserved hypothetical protein, at 1,162,425 to 1,162,859
_2855
Ac3H11_2856 - YefM protein (antitoxin to YoeB), at 1,162,856 to 1,163,110
_2856
Ac3H11_2857 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,163,373 to 1,164,848
_2857
Ac3H11_2858 - Probable transmembrane protein, at 1,164,981 to 1,165,601
_2858
Ac3H11_2859 - UPF0125 protein yfjF, at 1,165,627 to 1,165,974
_2859
Group
Condition
Ac3H11
_2855
Ac3H11
_2856
Ac3H11
_2857
Ac3H11
_2858
Ac3H11
_2859
nitrogen source
Ammonium chloride (N)
-1.3
N.D.
N.D.
N.D.
-0.6
nitrogen source
D-Alanine (N)
-1.1
N.D.
N.D.
N.D.
-0.3
lb
LB
-0.5
N.D.
N.D.
N.D.
-0.7
stress
copper (II) chloride 1 mM
-0.9
N.D.
N.D.
N.D.
-0.4
stress
Cisplatin 0.005 mg/ml
+0.1
N.D.
N.D.
N.D.
-1.2
nitrogen source
L-Proline (N)
-0.8
N.D.
N.D.
N.D.
-0.2
stress
nitrate 100 mM
-0.7
N.D.
N.D.
N.D.
-0.3
phage
phage 93.1
-0.6
N.D.
N.D.
N.D.
-0.3
nitrogen source
L-Isoleucine (N)
+0.1
N.D.
N.D.
N.D.
-0.8
carbon source
succinate (C)
+0.5
N.D.
N.D.
N.D.
-1.0
carbon source
L-Malic (C)
+0.3
N.D.
N.D.
N.D.
-0.8
stress
nitrate 20 mM
+0.3
N.D.
N.D.
N.D.
-0.7
motility
inner cut, R2A soft agar motility assay
+0.4
N.D.
N.D.
N.D.
-0.8
motility
inner cut, R2A soft agar motility assay
+0.4
N.D.
N.D.
N.D.
-0.7
stress
Aluminum chloride 2 mM
+0.3
N.D.
N.D.
N.D.
-0.6
carbon source
D,L-Lactate (C)
+0.3
N.D.
N.D.
N.D.
-0.5
stress
D-Cycloserine 0.05 mg/ml
+0.5
N.D.
N.D.
N.D.
-0.6
stress
copper (II) chloride 2 mM
+0.5
N.D.
N.D.
N.D.
-0.5
pH
LB, pH10
-1.0
N.D.
N.D.
N.D.
+1.0
carbon source
D-Lactate (C)
+0.6
N.D.
N.D.
N.D.
-0.5
carbon source
D-Galactose (C)
+0.7
N.D.
N.D.
N.D.
-0.5
lb
LB
+0.5
N.D.
N.D.
N.D.
-0.3
stress
sodium fluoride 20 mM
-0.3
N.D.
N.D.
N.D.
+0.6
carbon source
L-Lactate (C)
+0.7
N.D.
N.D.
N.D.
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.7
N.D.
N.D.
N.D.
-0.2
stress
Zinc 1 mM
+0.9
N.D.
N.D.
N.D.
-0.4
stress
Phosphomycin 0.02 mg/ml
+0.8
N.D.
N.D.
N.D.
-0.2
carbon source
D-Ribose (C)
+0.8
N.D.
N.D.
N.D.
-0.1
stress
Phosphomycin 0.06 mg/ml
+0.9
N.D.
N.D.
N.D.
+0.0
lb
LB
+0.8
N.D.
N.D.
N.D.
+0.4
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