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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_2847 and Ac3H11_2848 are separated by 40 nucleotides
Ac3H11_2848 and Ac3H11_2849 are separated by 101 nucleotides
Ac3H11_2849 and Ac3H11_2850 are separated by 138 nucleotides
Ac3H11_2850 and Ac3H11_2851 are separated by 102 nucleotides
Ac3H11_2847 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 1,151,849 to 1,153,309
_2847
Ac3H11_2848 - hypothetical protein, at 1,153,350 to 1,153,646
_2848
Ac3H11_2849 - PutR, transcriptional activator of PutA and PutP, at 1,153,748 to 1,154,221
_2849
Ac3H11_2850 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2)
(from data)
, at 1,154,360 to 1,158,145
_2850
Ac3H11_2851 - Bll5482 protein, at 1,158,248 to 1,159,321
_2851
Group
Condition
Ac3H11
_2847
Ac3H11
_2848
Ac3H11
_2849
Ac3H11
_2850
Ac3H11
_2851
nitrogen source
L-Proline (N)
-0.2
+0.2
-4.5
-5.6
-0.3
stress
Bacitracin 0.008 mg/ml
+0.3
-0.8
-0.4
-0.0
-0.0
lb
LB
-0.2
-0.3
+0.0
-0.1
-0.2
pH
LB, pH9
+0.3
-0.3
-0.1
-0.2
-0.4
nitrogen source
L-Isoleucine (N)
-0.4
+0.1
+0.0
+0.1
-0.4
lb
LB
-0.3
-0.2
-0.3
+0.0
+0.2
nitrogen source
L-Leucine (N)
-0.3
-0.1
+0.1
+0.0
-0.3
stress
nitrate 100 mM
+0.1
-0.0
-0.6
-0.1
+0.0
motility
inner cut, R2A soft agar motility assay
-0.5
-0.3
-0.3
+0.1
+0.7
motility
inner cut, R2A soft agar motility assay
-0.5
-0.2
-0.2
+0.1
+0.4
stress
Bacitracin 0.032 mg/ml
-0.2
+0.1
-0.4
+0.1
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.3
-0.3
+0.1
+0.1
+0.1
nitrogen source
L-Alanine (N)
+0.1
+0.5
-0.5
-0.1
-0.2
stress
Cisplatin 0.005 mg/ml
-0.6
-0.1
+0.3
+0.0
+0.2
carbon source
pyruvate (C)
+0.3
+0.2
-0.2
-0.1
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+0.1
+0.1
-0.2
-0.3
stress
Nickel (II) chloride 0.6 mM
+0.2
-0.2
+0.1
-0.2
+0.1
carbon source
D-Fructose (C)
+0.2
-0.4
+0.3
+0.1
-0.1
carbon source
succinate (C)
+0.5
+0.1
-0.1
-0.2
-0.1
stress
sodium fluoride 20 mM
+0.2
-0.0
+0.3
-0.1
-0.2
phage
phage 93.1
+0.0
+0.1
-0.0
-0.3
+0.4
stress
Chlorite 0.1 mM
-0.0
-0.0
+0.2
-0.2
+0.5
stress
sodium fluoride 25 mM
+0.5
+0.2
-0.0
-0.0
-0.2
stress
nitrite 10 mM
+0.4
-0.0
+0.3
-0.0
-0.2
stress
sodium fluoride 50 mM
+0.5
-0.1
+0.1
-0.1
+0.1
nitrogen source
D-Alanine (N)
+0.4
+0.2
+0.0
-0.1
+0.2
motility
inner cut, R2A soft agar motility assay
+0.0
+0.3
-0.0
+0.1
+0.5
carbon source
D-Gluconic Acid (C)
+0.3
+0.1
+0.4
-0.2
+0.3
pH
LB, pH10
+0.6
+0.3
-0.1
-0.2
+0.3
pH
LB, pH10
+0.6
+0.2
+0.1
+0.2
-0.1
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