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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2843 and Ac3H11_2844 are separated by 288 nucleotides
Ac3H11_2844 and Ac3H11_2845 are separated by 212 nucleotides
Ac3H11_2845 and Ac3H11_2846 are separated by 125 nucleotides
Ac3H11_2846 and Ac3H11_2847 are separated by 124 nucleotides
Ac3H11_2843 - Hemin uptake protein, at 1,149,333 to 1,149,575
_2843
Ac3H11_2844 - Protein GlcG, at 1,149,864 to 1,150,271
_2844
Ac3H11_2845 - Integral membrane protein, interacts with FtsH, at 1,150,484 to 1,151,209
_2845
Ac3H11_2846 - FIG00580970: hypothetical protein, at 1,151,335 to 1,151,724
_2846
Ac3H11_2847 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 1,151,849 to 1,153,309
_2847
Group
Condition
Ac3H11
_2843
Ac3H11
_2844
Ac3H11
_2845
Ac3H11
_2846
Ac3H11
_2847
stress
Cisplatin 0.005 mg/ml
N.D.
-0.6
-0.7
-0.5
-0.6
stress
Cobalt chloride 0.32 mM
N.D.
-0.4
-0.8
-0.3
-0.2
stress
Zinc 1 mM
N.D.
-0.5
-0.6
-0.2
-0.3
carbon source
L-Lactate (C)
N.D.
-1.2
-0.2
-0.0
-0.1
motility
inner cut, R2A soft agar motility assay
N.D.
-0.6
-0.4
+0.1
-0.5
carbon source
D,L-Lactate (C)
N.D.
-0.7
-0.4
-0.1
-0.1
stress
sodium fluoride 35 mM
N.D.
-0.8
-0.2
-0.2
+0.1
carbon source
D-Lactate (C)
N.D.
-0.7
-0.1
-0.2
+0.1
stress
copper (II) chloride 1 mM
N.D.
-0.4
-0.5
+0.2
-0.2
carbon source
L-Lactate (C)
N.D.
-0.8
-0.3
+0.3
+0.1
stress
syringaldehyde 2.5 mM
N.D.
-0.9
+0.1
+0.1
+0.1
nitrogen source
L-Histidine (N)
N.D.
-0.6
+0.1
+0.2
-0.4
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.2
-0.6
+0.3
-0.1
stress
Chlorite 0.1 mM
N.D.
+0.3
-0.3
-0.6
-0.0
stress
nitrite 10 mM
N.D.
-0.4
-0.5
-0.0
+0.4
carbon source
succinate (C)
N.D.
-0.6
-0.0
-0.2
+0.5
carbon source
D-Fructose (C)
N.D.
-0.6
+0.1
-0.1
+0.3
pH
LB, pH10
N.D.
-0.4
-0.1
-0.4
+0.6
stress
Bacitracin 0.008 mg/ml
N.D.
+0.3
-0.4
-0.4
+0.3
nitrogen source
L-Leucine (N)
N.D.
-0.4
+0.3
+0.2
-0.3
nitrogen source
D-Alanine (N)
N.D.
-0.9
+0.3
+0.1
+0.4
motility
inner cut, R2A soft agar motility assay
N.D.
+0.5
+0.1
-0.1
-0.5
carbon source
D-Gluconic Acid (C)
N.D.
-0.5
-0.1
+0.3
+0.3
lb
LB
N.D.
+0.6
-0.2
+0.1
-0.3
stress
Bacitracin 0.032 mg/ml
N.D.
+0.8
-0.3
+0.0
-0.2
stress
A22 0.025 mg/ml
N.D.
+0.9
+0.0
-0.2
-0.2
carbon source
propionate (C)
N.D.
+1.1
-0.1
-0.0
-0.0
stress
Cobalt chloride 0.4 mM
N.D.
+0.6
-0.0
+0.5
-0.1
temperature
LB 23C
N.D.
+0.8
-0.0
+0.2
+0.0
pH
LB, pH10
N.D.
+0.6
+0.2
+0.0
+0.6
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