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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2831 and Ac3H11_2832 are separated by 254 nucleotides
Ac3H11_2832 and Ac3H11_2833 are separated by 112 nucleotides
Ac3H11_2833 and Ac3H11_2834 are separated by 15 nucleotides
Ac3H11_2834 and Ac3H11_2835 are separated by 322 nucleotides
Ac3H11_2831 - Isocitrate lyase (EC 4.1.3.1)
(from data)
, at 1,137,897 to 1,139,228
_2831
Ac3H11_2832 - hypothetical protein, at 1,139,483 to 1,139,911
_2832
Ac3H11_2833 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,140,024 to 1,140,986
_2833
Ac3H11_2834 - Ribonuclease E inhibitor RraA, at 1,141,002 to 1,141,514
_2834
Ac3H11_2835 - DNA topoisomerase III (EC 5.99.1.2), at 1,141,837 to 1,142,157
_2835
Group
Condition
Ac3H11
_2831
Ac3H11
_2832
Ac3H11
_2833
Ac3H11
_2834
Ac3H11
_2835
nitrogen source
L-Leucine (N)
-6.5
-0.0
-0.3
-0.1
+0.2
carbon source
Tween 20 (C)
-5.1
-0.0
-0.2
-0.0
-0.5
nitrogen source
D-Alanine (N)
-0.7
+0.5
+0.0
-0.2
-2.8
nitrogen source
L-Alanine (N)
-0.7
+0.3
-0.0
+0.1
-2.8
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.0
-0.0
+0.0
-2.6
stress
copper (II) chloride 1 mM
-0.1
-0.1
-0.0
-0.0
-2.2
stress
Sisomicin 0.001 mg/ml
-0.3
+0.0
+0.0
-0.2
-1.8
stress
Chlorate 20 mM
-0.3
+0.2
-0.2
-0.1
-1.8
stress
Sisomicin 0.0005 mg/ml
-0.1
+0.0
-0.2
-0.0
-1.9
stress
Paraquat dichloride 0.01 mg/ml
-0.5
-0.3
-0.1
-0.0
-1.3
stress
Bacitracin 0.008 mg/ml
-0.4
-0.1
+0.0
+0.2
-1.7
carbon source
succinate (C)
+0.0
-0.1
-0.3
-0.3
-1.4
phage
phage 93.1
+0.0
-0.0
+0.1
+0.1
-2.2
nitrogen source
L-Isoleucine (N)
-1.0
-0.1
+0.1
-0.7
-0.2
stress
copper (II) chloride 1 mM
-0.2
+0.2
-0.3
-0.1
-1.5
stress
Cobalt chloride 0.16 mM
-0.1
-0.1
+0.1
-0.0
-1.7
carbon source
D-Glucose (C)
-0.7
-0.1
+0.1
+0.0
-1.0
nitrogen source
L-Arginine (N)
-0.6
+0.1
-0.2
-0.1
-0.8
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.3
-0.3
-0.2
-0.7
nitrogen source
L-tyrosine (N)
-2.5
+0.2
+0.1
+0.0
+0.7
stress
Zinc 1 mM
-0.0
-0.1
+0.1
+0.2
-1.6
carbon source
D-Glucose (C)
-0.8
+0.1
+0.1
+0.0
-0.8
lb
LB
-0.1
+0.1
+0.1
+0.1
-1.5
nitrogen source
Ammonium chloride (N)
-1.4
+0.3
+0.1
+0.1
-0.4
carbon source
a-Ketoglutaric (C)
+0.1
+0.2
+0.3
+0.1
-1.0
carbon source
D-Gluconic Acid (C)
+0.2
-0.1
-0.2
+0.3
+1.0
pH
LB, pH10
+0.2
+0.1
+0.2
-0.2
+1.3
carbon source
D-Gluconic Acid (C)
+0.1
+0.2
-0.1
+0.2
+1.4
pH
LB, pH10
+0.2
+0.0
+0.4
+0.1
+1.7
stress
D-Cycloserine 0.05 mg/ml
+0.2
-0.1
+0.3
+0.2
+4.1
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