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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2817 and Ac3H11_2818 are separated by 64 nucleotides
Ac3H11_2818 and Ac3H11_2819 are separated by 9 nucleotides
Ac3H11_2819 and Ac3H11_2820 are separated by 21 nucleotides
Ac3H11_2820 and Ac3H11_2821 are separated by 4 nucleotides
Ac3H11_2817 - hypothetical protein, at 1,121,081 to 1,121,377
_2817
Ac3H11_2818 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 1,121,442 to 1,122,263
_2818
Ac3H11_2819 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 1,122,273 to 1,123,721
_2819
Ac3H11_2820 - IncF plasmid conjugative transfer protein TraG, at 1,123,743 to 1,126,517
_2820
Ac3H11_2821 - hypothetical protein, at 1,126,522 to 1,126,854
_2821
Group
Condition
Ac3H11
_2817
Ac3H11
_2818
Ac3H11
_2819
Ac3H11
_2820
Ac3H11
_2821
phage
phage 93.2
-0.2
-0.9
-0.1
-0.1
-0.6
lb
LB
+0.2
-0.8
-0.1
+0.0
-0.9
lb
LB
-0.8
-0.4
+0.0
+0.2
-0.5
phage
phage 93.1
-0.5
-0.2
+0.0
+0.1
-0.5
stress
Cisplatin 0.005 mg/ml
-0.6
-0.5
-0.1
-0.3
+0.5
nitrogen source
L-Threonine (N)
-0.3
-0.6
+0.2
+0.1
-0.4
stress
nitrate 100 mM
-0.1
+0.6
-0.3
-0.1
-0.9
nitrogen source
Ammonium chloride (N)
+1.2
+0.1
+0.1
-0.1
-2.1
nitrogen source
D-Alanine (N)
+0.4
+0.1
+0.1
-0.0
-1.3
motility
inner cut, R2A soft agar motility assay
-0.1
-1.1
+0.1
-0.1
+0.6
lb
LB
-0.6
-0.2
-0.1
-0.1
+0.3
stress
Nickel (II) chloride 0.8 mM
+0.4
-0.7
-0.1
+0.2
-0.4
stress
Cisplatin 0.0025 mg/ml
+0.3
+0.2
-0.0
+0.0
-0.9
stress
Chlorite 0.1 mM
-0.9
+0.1
-0.0
+0.0
+0.5
stress
Cobalt chloride 0.32 mM
+0.4
+0.1
-0.3
+0.0
-0.5
stress
Nickel (II) chloride 0.6 mM
+0.8
-0.4
-0.2
-0.2
-0.1
carbon source
a-Ketoglutaric (C)
-0.5
+0.2
-0.2
+0.3
+0.1
stress
nitrite 10 mM
+0.7
-0.7
+0.1
-0.1
+0.1
lb
LB
+0.4
+0.4
-0.2
-0.1
-0.4
carbon source
D-Galactose (C)
-0.2
+0.5
+0.1
+0.1
-0.4
carbon source
D-Galactose (C)
-0.2
+0.5
-0.4
+0.0
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.6
+0.7
+0.1
+0.2
+0.0
motility
inner cut, R2A soft agar motility assay
+0.2
+1.4
-0.2
+0.3
-0.9
carbon source
succinate (C)
-0.3
+0.6
+0.1
+0.1
+0.5
carbon source
D-Lactate (C)
+0.2
+0.6
-0.4
-0.0
+0.6
pH
LB, pH10
+0.2
+0.4
+0.3
-0.3
+0.5
nitrogen source
L-Alanine (N)
+0.6
+0.4
+0.3
-0.2
+0.1
stress
Sisomicin 0.004 mg/ml
+0.0
+0.5
+0.0
-0.1
+0.7
carbon source
a-Ketoglutaric (C)
-0.3
+1.5
-0.5
+0.1
+0.6
stress
copper (II) chloride 2 mM
-0.2
+0.9
-0.3
+0.2
+1.2
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