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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2786 and Ac3H11_2787 are separated by 2553 nucleotides
Ac3H11_2787 and Ac3H11_2788 are separated by 70 nucleotides
Ac3H11_2788 and Ac3H11_2789 overlap by 4 nucleotides
Ac3H11_2789 and Ac3H11_2790 are separated by 234 nucleotides
Ac3H11_2786 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 1,090,747 to 1,091,589
_2786
Ac3H11_2787 - hypothetical protein, at 1,094,143 to 1,094,589
_2787
Ac3H11_2788 - hypothetical protein, at 1,094,660 to 1,094,908
_2788
Ac3H11_2789 - hypothetical protein, at 1,094,905 to 1,095,249
_2789
Ac3H11_2790 - DNA primase (EC 2.7.7.-), phage-associated, at 1,095,484 to 1,096,488
_2790
Group
Condition
Ac3H11
_2786
Ac3H11
_2787
Ac3H11
_2788
Ac3H11
_2789
Ac3H11
_2790
stress
Cisplatin 0.0025 mg/ml
-0.1
N.D.
-1.3
-0.4
-0.3
stress
Chlorite 0.1 mM
+0.1
N.D.
-1.7
-0.5
+0.4
stress
Ceftazidime 0.01 mg/ml
-0.2
N.D.
-0.7
-0.2
-0.6
stress
Cobalt chloride 0.32 mM
+0.2
N.D.
-1.3
-0.5
-0.1
stress
Cobalt chloride 0.16 mM
-0.0
N.D.
-1.4
-0.3
+0.0
carbon source
D-Fructose (C)
-0.2
N.D.
-1.0
-0.5
+0.1
stress
Sisomicin 0.0005 mg/ml
-0.2
N.D.
-1.0
-0.4
+0.1
stress
Bacitracin 0.016 mg/ml
+0.5
N.D.
-1.5
-0.1
-0.4
stress
sodium fluoride 50 mM
+0.2
N.D.
-1.1
+0.1
-0.5
stress
sodium fluoride 25 mM
-0.2
N.D.
-0.7
-0.5
+0.2
carbon source
D-Ribose (C)
-0.4
N.D.
-0.8
-0.3
+0.4
nitrogen source
L-Proline (N)
+0.2
N.D.
+0.1
-1.6
+0.3
stress
Cobalt chloride 0.4 mM
-0.2
N.D.
-1.1
+0.3
+0.1
stress
nitrate 20 mM
-0.5
N.D.
-0.8
+0.6
-0.1
stress
copper (II) chloride 1 mM
-0.7
N.D.
-0.7
+0.5
+0.2
pH
LB, pH10
-0.4
N.D.
+0.1
+0.5
-0.9
nitrogen source
L-Alanine (N)
+0.4
N.D.
+0.3
-1.4
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.8
N.D.
-1.3
-0.2
+0.4
stress
Bacitracin 0.008 mg/ml
+0.2
N.D.
-1.3
+0.7
+0.4
stress
copper (II) chloride 2 mM
+0.3
N.D.
+1.0
-0.9
-0.3
motility
inner cut, R2A soft agar motility assay
+0.9
N.D.
-0.6
+0.3
-0.3
nitrogen source
L-Isoleucine (N)
-0.5
N.D.
+0.7
-0.0
+0.5
phage
phage 93.2
-0.4
N.D.
+1.0
+0.4
-0.0
stress
Cisplatin 0.005 mg/ml
-0.2
N.D.
-0.1
+1.2
+0.4
stress
perchlorate 10 mM
-0.3
N.D.
+0.8
+1.0
-0.2
nitrogen source
D-Alanine (N)
+0.3
N.D.
+0.4
+1.0
-0.1
carbon source
succinate (C)
+0.1
N.D.
+0.7
+1.2
+0.0
motility
inner cut, R2A soft agar motility assay
+0.4
N.D.
+0.1
+1.2
+0.4
nitrogen source
Ammonium chloride (N)
-1.1
N.D.
+1.8
+0.6
+0.9
stress
Zinc 1 mM
+0.2
N.D.
+1.4
+0.5
+0.3
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