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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2780 and Ac3H11_2781 are separated by 1207 nucleotides
Ac3H11_2781 and Ac3H11_2782 are separated by 21 nucleotides
Ac3H11_2782 and Ac3H11_2783 overlap by 4 nucleotides
Ac3H11_2783 and Ac3H11_2784 are separated by 119 nucleotides
Ac3H11_2780 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 1,082,777 to 1,084,474
_2780
Ac3H11_2781 - Tricarboxylate transport protein TctC, at 1,085,682 to 1,086,677
_2781
Ac3H11_2782 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,086,699 to 1,087,835
_2782
Ac3H11_2783 - Citrate synthase (si) (EC 2.3.3.1), at 1,087,832 to 1,088,641
_2783
Ac3H11_2784 - Cyn operon transcriptional activator, at 1,088,761 to 1,089,669
_2784
Group
Condition
Ac3H11
_2780
Ac3H11
_2781
Ac3H11
_2782
Ac3H11
_2783
Ac3H11
_2784
pH
LB, pH10
-0.6
+0.0
-0.0
-0.5
-0.5
stress
Cisplatin 0.005 mg/ml
-0.4
-0.1
-0.4
+0.1
-0.0
nitrogen source
D-Alanine (N)
-0.3
-0.5
-0.3
+0.6
-0.3
stress
sodium fluoride 25 mM
-0.2
+0.1
-0.3
-0.1
-0.3
nitrogen source
L-Isoleucine (N)
-0.1
-0.4
+0.1
-0.1
-0.2
pH
LB, pH10
-0.2
-0.0
-0.2
-0.4
+0.2
motility
inner cut, R2A soft agar motility assay
+0.0
+0.1
-0.4
-0.1
-0.3
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.2
-0.1
-0.2
+0.3
nitrogen source
L-Alanine (N)
-0.5
-0.1
+0.1
+0.1
-0.0
carbon source
Tween 20 (C)
-0.2
-0.0
-0.1
+0.2
-0.3
stress
copper (II) chloride 2 mM
-0.1
-0.2
-0.4
+0.0
+0.4
nitrogen source
Ammonium chloride (N)
-0.1
-0.2
+0.1
+0.4
-0.5
nitrogen source
L-Leucine (N)
-0.1
-0.2
+0.1
+0.3
-0.3
lb
LB
-0.2
-0.1
-0.2
+0.2
+0.1
stress
Ceftazidime 0.01 mg/ml
+0.0
-0.1
-0.2
+0.3
-0.2
stress
Cobalt chloride 0.16 mM
+0.0
+0.1
-0.1
-0.3
+0.2
stress
sodium fluoride 35 mM
-0.2
-0.1
+0.0
-0.1
+0.3
stress
D-Cycloserine 0.05 mg/ml
-0.0
+0.1
-0.1
+0.4
-0.4
nitrogen source
L-Arginine (N)
-0.1
+0.1
+0.0
+0.3
-0.3
motility
inner cut, R2A soft agar motility assay
+0.3
-0.1
-0.2
-0.1
+0.3
motility
inner cut, R2A soft agar motility assay
+0.2
-0.1
+0.0
-0.3
+0.4
nitrogen source
L-Threonine (N)
-0.2
-0.0
-0.0
+0.4
+0.1
stress
Sisomicin 0.0005 mg/ml
-0.2
-0.1
+0.1
+0.2
+0.4
stress
Paraquat dichloride 0.01 mg/ml
+0.1
+0.3
-0.3
+0.2
+0.1
stress
copper (II) chloride 1 mM
+0.0
-0.1
-0.2
+0.2
+0.5
stress
Cobalt chloride 0.4 mM
+0.3
-0.2
-0.1
+0.1
+0.3
stress
Bacitracin 0.032 mg/ml
+0.2
+0.0
+0.1
-0.3
+0.5
stress
Chlorite 0.1 mM
-0.1
-0.1
+0.1
+0.4
+0.4
stress
Cisplatin 0.0025 mg/ml
-0.2
+0.4
+0.1
+0.5
+0.1
phage
phage 93.2
+0.1
-0.2
+0.2
+0.2
+0.4
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