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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2775 and Ac3H11_2776 are separated by 4 nucleotides
Ac3H11_2776 and Ac3H11_2777 are separated by 27 nucleotides
Ac3H11_2777 and Ac3H11_2778 are separated by 14 nucleotides
Ac3H11_2778 and Ac3H11_2779 are separated by 257 nucleotides
Ac3H11_2775 - Enoyl-CoA hydratase (EC 4.2.1.17), at 1,075,944 to 1,076,783
_2775
Ac3H11_2776 - Lactoylglutathione lyase and related lyases, at 1,076,788 to 1,077,753
_2776
Ac3H11_2777 - FIG005548: transport protein, at 1,077,781 to 1,080,243
_2777
Ac3H11_2778 - FIG002465: BNR repeat protein, at 1,080,258 to 1,081,136
_2778
Ac3H11_2779 - FIG002188: hypothetical protein, at 1,081,394 to 1,082,758
_2779
Group
Condition
Ac3H11
_2775
Ac3H11
_2776
Ac3H11
_2777
Ac3H11
_2778
Ac3H11
_2779
nitrogen source
L-Isoleucine (N)
N.D.
-0.5
-0.0
-0.7
-0.1
motility
inner cut, R2A soft agar motility assay
N.D.
-0.1
-0.4
-0.4
-0.2
lb
LB
N.D.
-0.4
+0.0
-0.2
-0.4
stress
D-Cycloserine 0.05 mg/ml
N.D.
-0.5
-0.4
-0.1
-0.0
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-0.0
-0.4
+0.1
-0.4
pH
LB, pH10
N.D.
-0.4
-0.1
+0.1
-0.3
stress
Zinc 1 mM
N.D.
-0.4
-0.0
-0.2
-0.1
nitrogen source
L-Histidine (N)
N.D.
-0.2
-0.2
-0.2
-0.1
stress
Bacitracin 0.016 mg/ml
N.D.
+0.0
-0.3
-0.3
-0.1
carbon source
D-Mannose (C)
N.D.
-0.1
-0.1
-0.3
-0.1
stress
Cisplatin 0.005 mg/ml
N.D.
+0.0
+0.1
-0.8
-0.0
nitrogen source
Ammonium chloride (N)
N.D.
+0.1
+0.0
-0.6
-0.1
stress
syringaldehyde 2.5 mM
N.D.
-0.3
-0.1
+0.1
-0.2
stress
nitrite 10 mM
N.D.
-0.2
+0.1
-0.0
-0.5
motility
inner cut, R2A soft agar motility assay
N.D.
+0.2
-0.0
-0.2
-0.5
stress
Bacitracin 0.032 mg/ml
N.D.
-0.0
-0.1
-0.4
+0.1
nitrogen source
L-Leucine (N)
N.D.
+0.1
-0.3
-0.2
-0.0
motility
inner cut, R2A soft agar motility assay
N.D.
+0.3
-0.1
-0.1
-0.3
stress
copper (II) chloride 1 mM
N.D.
+0.2
+0.0
-0.5
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
-0.1
+0.3
-0.3
-0.1
stress
nitrate 45 mM
N.D.
-0.2
+0.0
+0.3
-0.4
stress
Cobalt chloride 0.32 mM
N.D.
+0.3
-0.2
-0.2
-0.1
stress
Phosphomycin 0.02 mg/ml
N.D.
+0.3
-0.0
-0.0
-0.3
pH
LB, pH10
N.D.
+0.4
-0.1
-0.2
-0.1
lb
LB
N.D.
+0.2
-0.1
+0.4
-0.1
carbon source
D,L-Lactate (C)
N.D.
-0.2
+0.2
+0.3
+0.2
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.1
+0.2
+0.5
-0.1
carbon source
succinate (C)
N.D.
-0.1
+0.2
+0.2
+0.2
phage
phage 93.2
N.D.
+0.3
+0.1
-0.2
+0.4
phage
phage 93.1
N.D.
+0.1
+0.1
+0.4
+0.1
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