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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2761 and Ac3H11_2762 are separated by 8 nucleotides
Ac3H11_2762 and Ac3H11_2763 are separated by 12 nucleotides
Ac3H11_2763 and Ac3H11_2764 overlap by 24 nucleotides
Ac3H11_2764 and Ac3H11_2765 overlap by 14 nucleotides
Ac3H11_2761 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 1,061,140 to 1,062,777
_2761
Ac3H11_2762 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,062,786 to 1,063,553
_2762
Ac3H11_2763 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,063,566 to 1,065,131
_2763
Ac3H11_2764 - hypothetical protein, at 1,065,108 to 1,065,335
_2764
Ac3H11_2765 - Fumarylacetoacetate hydrolase family protein, at 1,065,322 to 1,066,308
_2765
Group
Condition
Ac3H11
_2761
Ac3H11
_2762
Ac3H11
_2763
Ac3H11
_2764
Ac3H11
_2765
stress
Cisplatin 0.005 mg/ml
-0.3
-1.1
+0.1
N.D.
-0.2
stress
nitrite 10 mM
+0.0
-0.8
-0.5
N.D.
-0.2
carbon source
L-Arabinose (C)
-0.1
-0.5
-0.3
N.D.
-0.2
phage
phage 93.1
-0.1
-0.1
-0.5
N.D.
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
-0.5
-0.2
N.D.
-0.2
nitrogen source
L-Threonine (N)
-0.1
-0.4
-0.1
N.D.
-0.3
carbon source
pyruvate (C)
-0.0
-0.4
-0.2
N.D.
-0.4
pH
LB, pH8
-0.1
-0.4
-0.2
N.D.
-0.3
carbon source
D-Gluconic Acid (C)
-0.0
-0.4
-0.3
N.D.
-0.2
stress
syringaldehyde 2.5 mM
-0.4
+0.1
-0.5
N.D.
-0.2
nitrogen source
L-Leucine (N)
-0.2
-0.5
-0.2
N.D.
+0.2
carbon source
succinate (C)
-0.1
-0.4
-0.2
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
-0.1
-0.4
-0.3
N.D.
+0.2
stress
Aluminum chloride 2 mM
+0.1
-0.4
+0.2
N.D.
-0.4
carbon source
succinate (C)
+0.2
-0.4
-0.2
N.D.
-0.0
nitrogen source
Ammonium chloride (N)
-0.5
+0.2
-0.3
N.D.
+0.2
stress
Phosphomycin 0.02 mg/ml
+0.1
-0.4
-0.2
N.D.
+0.1
stress
Chlorite 0.1 mM
+0.2
-0.6
+0.0
N.D.
-0.0
stress
Bacitracin 0.032 mg/ml
-0.1
-0.1
-0.4
N.D.
+0.2
pH
LB, pH10
-0.1
-0.4
-0.2
N.D.
+0.5
stress
nitrite 10 mM
+0.1
-0.2
+0.2
N.D.
-0.3
lb
LB
-0.2
-0.3
+0.3
N.D.
+0.2
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.5
+0.1
N.D.
+0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.1
-0.1
N.D.
+0.4
pH
LB, pH10
-0.2
-0.2
+0.4
N.D.
+0.2
motility
inner cut, R2A soft agar motility assay
+0.0
+0.5
+0.0
N.D.
-0.2
stress
copper (II) chloride 2 mM
+0.1
-0.4
+0.3
N.D.
+0.4
lb
LB
-0.0
+0.2
+0.5
N.D.
-0.2
stress
Sisomicin 0.001 mg/ml
+0.3
-0.3
+0.2
N.D.
+0.4
motility
inner cut, R2A soft agar motility assay
+0.2
+0.6
-0.0
N.D.
-0.1
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