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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2759 and Ac3H11_2760 are separated by 247 nucleotides
Ac3H11_2760 and Ac3H11_2761 are separated by 3 nucleotides
Ac3H11_2761 and Ac3H11_2762 are separated by 8 nucleotides
Ac3H11_2762 and Ac3H11_2763 are separated by 12 nucleotides
Ac3H11_2759 - probable oxidoreductase, at 1,059,138 to 1,060,019
_2759
Ac3H11_2760 - putative exported protein, at 1,060,267 to 1,061,136
_2760
Ac3H11_2761 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 1,061,140 to 1,062,777
_2761
Ac3H11_2762 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,062,786 to 1,063,553
_2762
Ac3H11_2763 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,063,566 to 1,065,131
_2763
Group
Condition
Ac3H11
_2759
Ac3H11
_2760
Ac3H11
_2761
Ac3H11
_2762
Ac3H11
_2763
stress
Cisplatin 0.005 mg/ml
-0.4
-0.5
-0.3
-1.1
+0.1
stress
nitrite 10 mM
-0.5
-0.3
+0.0
-0.8
-0.5
stress
Bacitracin 0.008 mg/ml
-0.4
-0.3
-0.1
-0.5
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.1
-0.0
-0.4
-0.3
stress
Nickel (II) chloride 0.6 mM
-0.6
-0.2
+0.1
-0.5
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.5
-0.1
+0.1
-0.4
-0.2
carbon source
L-Arabinose (C)
-0.2
+0.0
-0.1
-0.5
-0.3
motility
inner cut, R2A soft agar motility assay
-0.2
-0.1
-0.1
-0.4
-0.3
stress
nitrate 20 mM
-0.2
-0.2
-0.1
-0.1
-0.5
nitrogen source
L-Leucine (N)
-0.0
+0.1
-0.2
-0.5
-0.2
nitrogen source
Ammonium chloride (N)
+0.0
-0.4
-0.5
+0.2
-0.3
carbon source
D-Lactate (C)
-0.3
+0.1
-0.1
-0.4
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.3
-0.1
-0.5
-0.2
phage
phage 93.1
-0.3
+0.1
-0.1
-0.1
-0.5
lb
LB
-0.2
-0.3
-0.2
-0.3
+0.3
pH
LB, pH10
+0.4
-0.4
-0.1
-0.4
-0.2
carbon source
succinate (C)
-0.2
-0.5
+0.1
-0.1
+0.1
stress
Chlorite 0.1 mM
-0.3
+0.1
+0.2
-0.6
+0.0
carbon source
succinate (C)
+0.0
+0.2
-0.1
-0.4
-0.2
stress
syringaldehyde 2.5 mM
+0.2
+0.1
-0.4
+0.1
-0.5
nitrogen source
L-Threonine (N)
+0.3
-0.1
-0.1
-0.4
-0.1
stress
Zinc 1 mM
+0.1
+0.4
-0.2
-0.3
-0.1
stress
copper (II) chloride 2 mM
-0.2
+0.1
+0.1
-0.4
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.4
-0.2
-0.2
+0.1
-0.1
stress
Sisomicin 0.001 mg/ml
+0.2
-0.3
+0.3
-0.3
+0.2
lb
LB
+0.2
+0.1
+0.2
-0.4
+0.1
lb
LB
+0.2
+0.2
+0.1
-0.4
+0.1
lb
LB
-0.2
+0.1
-0.0
+0.2
+0.5
motility
inner cut, R2A soft agar motility assay
-0.5
+0.3
+0.2
+0.6
-0.0
stress
Cobalt chloride 0.4 mM
+0.3
+0.4
-0.2
+0.1
+0.1
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