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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2756 and Ac3H11_2757 overlap by 4 nucleotides
Ac3H11_2757 and Ac3H11_2758 are separated by 98 nucleotides
Ac3H11_2758 and Ac3H11_2759 overlap by 45 nucleotides
Ac3H11_2759 and Ac3H11_2760 are separated by 247 nucleotides
Ac3H11_2756 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,056,860 to 1,057,753
_2756
Ac3H11_2757 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45), at 1,057,750 to 1,058,769
_2757
Ac3H11_2758 - hypothetical protein, at 1,058,868 to 1,059,182
_2758
Ac3H11_2759 - probable oxidoreductase, at 1,059,138 to 1,060,019
_2759
Ac3H11_2760 - putative exported protein, at 1,060,267 to 1,061,136
_2760
Group
Condition
Ac3H11
_2756
Ac3H11
_2757
Ac3H11
_2758
Ac3H11
_2759
Ac3H11
_2760
nitrogen source
L-Alanine (N)
-1.1
+0.0
-0.6
+0.4
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.5
+0.2
-0.1
-0.6
-0.2
carbon source
D-Mannose (C)
-0.6
-0.1
-0.1
-0.4
-0.1
stress
Cisplatin 0.005 mg/ml
+0.0
-0.1
-0.2
-0.4
-0.5
carbon source
pyruvate (C)
-0.2
-0.3
-0.3
-0.1
-0.2
carbon source
succinate (C)
-0.1
+0.0
-0.2
-0.2
-0.5
phage
phage 93.2
-0.3
-0.0
-0.4
-0.1
-0.1
stress
Bacitracin 0.008 mg/ml
-0.1
-0.1
+0.1
-0.4
-0.3
stress
nitrite 10 mM
+0.0
-0.1
+0.3
-0.5
-0.3
carbon source
D-Lactate (C)
-0.5
-0.0
+0.1
-0.3
+0.1
motility
inner cut, R2A soft agar motility assay
-0.3
+0.1
-0.2
-0.5
+0.3
nitrogen source
Ammonium chloride (N)
-0.4
+0.0
+0.2
+0.0
-0.4
stress
Cobalt chloride 0.32 mM
-0.4
-0.1
+0.1
-0.2
+0.1
pH
LB, pH10
+0.0
-0.4
-0.1
+0.4
-0.4
stress
Tetracycline 0.0001 mg/ml
-0.2
-0.2
+0.3
+0.1
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.2
-0.1
+0.2
-0.3
stress
Chlorite 0.1 mM
-0.2
-0.0
+0.4
-0.3
+0.1
stress
Phosphomycin 0.06 mg/ml
+0.2
+0.2
-0.2
-0.4
+0.0
nitrogen source
L-Threonine (N)
-0.1
-0.4
+0.2
+0.3
-0.1
phage
phage 93.1
+0.3
-0.1
-0.1
-0.3
+0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.1
+0.0
-0.1
+0.4
-0.2
stress
perchlorate 10 mM
-0.3
+0.3
-0.1
-0.0
+0.3
stress
Sisomicin 0.001 mg/ml
+0.0
+0.1
+0.2
+0.2
-0.3
lb
LB
-0.4
+0.0
+0.2
+0.2
+0.2
nitrogen source
D-Alanine (N)
+0.1
-0.2
+0.4
+0.1
-0.2
motility
inner cut, R2A soft agar motility assay
+0.5
+0.1
-0.1
-0.2
-0.1
lb
LB
-0.1
+0.2
+0.3
+0.2
+0.1
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.2
+0.3
+0.1
+0.2
stress
Zinc 1 mM
-0.0
+0.3
+0.0
+0.1
+0.4
stress
Cobalt chloride 0.4 mM
-0.2
+0.1
+0.3
+0.3
+0.4
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