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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2754 and Ac3H11_2755 are separated by 37 nucleotides
Ac3H11_2755 and Ac3H11_2756 are separated by 159 nucleotides
Ac3H11_2756 and Ac3H11_2757 overlap by 4 nucleotides
Ac3H11_2757 and Ac3H11_2758 are separated by 98 nucleotides
Ac3H11_2754 - Biphenyl dioxygenase beta subunit (EC 1.14.12.18), at 1,054,693 to 1,055,262
_2754
Ac3H11_2755 - Large subunit naph/bph dioxygenase, at 1,055,300 to 1,056,700
_2755
Ac3H11_2756 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,056,860 to 1,057,753
_2756
Ac3H11_2757 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45), at 1,057,750 to 1,058,769
_2757
Ac3H11_2758 - hypothetical protein, at 1,058,868 to 1,059,182
_2758
Group
Condition
Ac3H11
_2754
Ac3H11
_2755
Ac3H11
_2756
Ac3H11
_2757
Ac3H11
_2758
nitrogen source
L-Alanine (N)
+0.4
+0.1
-1.1
+0.0
-0.6
stress
Cisplatin 0.005 mg/ml
-0.6
-0.2
+0.0
-0.1
-0.2
stress
D-Cycloserine 0.05 mg/ml
-0.4
-0.4
+0.2
-0.2
-0.1
stress
Bacitracin 0.032 mg/ml
-0.2
-0.2
-0.1
-0.2
-0.1
stress
nitrate 45 mM
-0.2
-0.2
-0.3
-0.1
-0.1
carbon source
succinate (C)
-0.2
-0.3
-0.2
-0.1
+0.0
carbon source
D-Lactate (C)
-0.2
-0.2
-0.5
-0.0
+0.1
phage
phage 93.2
+0.1
-0.1
-0.3
-0.0
-0.4
carbon source
pyruvate (C)
+0.1
-0.1
-0.2
-0.3
-0.3
stress
perchlorate 10 mM
-0.3
-0.1
-0.3
+0.3
-0.1
stress
Phosphomycin 0.06 mg/ml
-0.5
-0.3
+0.2
+0.2
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.2
+0.1
-0.5
+0.2
-0.1
lb
LB
-0.3
-0.1
-0.3
+0.3
-0.0
carbon source
D-Lactate (C)
+0.2
+0.1
-0.5
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
+0.0
-0.3
-0.0
+0.3
-0.3
lb
LB
-0.1
+0.1
-0.4
+0.0
+0.2
nitrogen source
L-Threonine (N)
+0.2
-0.1
-0.1
-0.4
+0.2
pH
LB, pH9
+0.2
-0.1
-0.2
+0.2
-0.1
stress
A22 0.025 mg/ml
+0.2
-0.0
-0.2
+0.3
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.2
-0.1
-0.1
+0.2
+0.3
pH
LB, pH10
+0.4
+0.1
+0.0
-0.4
-0.1
motility
inner cut, R2A soft agar motility assay
+0.4
+0.0
-0.3
+0.1
-0.2
nitrogen source
D-Alanine (N)
-0.4
+0.2
+0.1
-0.2
+0.4
lb
LB
-0.4
+0.2
+0.0
+0.2
+0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
+0.0
+0.1
+0.3
stress
Cobalt chloride 0.4 mM
-0.0
+0.3
-0.2
+0.1
+0.3
nitrogen source
Ammonium chloride (N)
+0.2
+0.4
-0.4
+0.0
+0.2
phage
phage 93.1
+0.2
+0.2
+0.3
-0.1
-0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
+0.5
+0.1
-0.1
lb
LB
+0.2
+0.1
-0.1
+0.2
+0.3
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