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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2750 and Ac3H11_2751 are separated by 184 nucleotides
Ac3H11_2751 and Ac3H11_2752 are separated by 45 nucleotides
Ac3H11_2752 and Ac3H11_2753 are separated by 153 nucleotides
Ac3H11_2753 and Ac3H11_2754 are separated by 6 nucleotides
Ac3H11_2750 - Large subunit naph/bph dioxygenase, at 1,049,355 to 1,050,755
_2750
Ac3H11_2751 - Quinone oxidoreductase (EC 1.6.5.5), at 1,050,940 to 1,051,869
_2751
Ac3H11_2752 - BarH, at 1,051,915 to 1,053,225
_2752
Ac3H11_2753 - Cytochrome P450, at 1,053,379 to 1,054,686
_2753
Ac3H11_2754 - Biphenyl dioxygenase beta subunit (EC 1.14.12.18), at 1,054,693 to 1,055,262
_2754
Group
Condition
Ac3H11
_2750
Ac3H11
_2751
Ac3H11
_2752
Ac3H11
_2753
Ac3H11
_2754
lb
LB
-0.1
-1.6
-0.3
-0.1
-0.3
carbon source
succinate (C)
-0.1
-1.7
-0.1
-0.1
-0.2
nitrogen source
Ammonium chloride (N)
+0.1
-1.5
-0.2
-0.7
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.2
-1.3
-0.3
-0.3
-0.4
stress
Paraquat dichloride 0.01 mg/ml
-0.0
-1.6
-0.2
-0.1
+0.0
stress
Bacitracin 0.008 mg/ml
-0.0
-0.9
-0.2
-0.4
-0.2
stress
nitrate 45 mM
+0.1
-0.8
-0.4
-0.1
-0.2
nitrogen source
D-Alanine (N)
-0.1
-0.0
-0.5
-0.3
-0.4
nitrogen source
L-Leucine (N)
-0.0
-0.8
-0.3
-0.0
-0.1
lb
LB
+0.1
-1.3
-0.2
+0.1
+0.2
stress
syringaldehyde 2.5 mM
-0.2
-0.9
-0.1
+0.2
-0.3
stress
Cephalothin 0.025 mg/ml
+0.0
-0.9
-0.1
-0.3
+0.2
nitrogen source
L-tyrosine (N)
-0.2
-1.0
-0.0
-0.1
+0.1
stress
Bacitracin 0.016 mg/ml
-0.2
-0.9
+0.1
-0.0
+0.1
motility
inner cut, R2A soft agar motility assay
+0.3
-0.7
-0.3
-0.6
+0.4
nitrogen source
L-Proline (N)
+0.2
-0.7
-0.2
+0.0
-0.2
stress
Cisplatin 0.005 mg/ml
-0.7
+0.7
-0.2
+0.1
-0.6
lb
LB
-0.3
-0.3
-0.3
+0.2
-0.1
motility
inner cut, R2A soft agar motility assay
+0.0
-0.7
-0.4
+0.1
+0.2
stress
nitrate 100 mM
-0.1
-0.4
+0.3
-0.3
-0.2
carbon source
D-Glucose (C)
+0.0
-0.8
-0.2
+0.2
+0.1
carbon source
D-Fructose (C)
+0.1
-0.6
-0.0
-0.1
+0.4
carbon source
succinate (C)
-0.1
+0.7
-0.2
-0.0
-0.3
phage
phage 93.2
-0.3
+0.2
+0.8
-0.7
+0.1
carbon source
L-Malic (C)
-0.1
+0.7
+0.1
-0.4
+0.1
carbon source
D-Sorbitol (C)
+0.1
+0.7
+0.2
-0.5
-0.1
stress
copper (II) chloride 2 mM
-0.1
+1.1
-0.0
-0.4
-0.1
stress
perchlorate 10 mM
-0.2
+1.4
+0.3
-0.5
-0.3
stress
nitrite 10 mM
+0.2
+1.1
-0.1
-0.2
+0.1
carbon source
D-Gluconic Acid (C)
+0.1
+2.0
+0.1
+0.4
+0.0
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