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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2741 and Ac3H11_2742 are separated by 19 nucleotides
Ac3H11_2742 and Ac3H11_2743 overlap by 4 nucleotides
Ac3H11_2743 and Ac3H11_2744 are separated by 218 nucleotides
Ac3H11_2744 and Ac3H11_2745 are separated by 35 nucleotides
Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302
_2741
Ac3H11_2742 - Fumarylacetoacetate hydrolase family protein, at 1,041,322 to 1,042,167
_2742
Ac3H11_2743 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45), at 1,042,164 to 1,043,252
_2743
Ac3H11_2744 - Hemerythrin HHE cation binding protein, at 1,043,471 to 1,044,490
_2744
Ac3H11_2745 - Transcriptional regulator, TetR family, at 1,044,526 to 1,045,200
_2745
Group
Condition
Ac3H11
_2741
Ac3H11
_2742
Ac3H11
_2743
Ac3H11
_2744
Ac3H11
_2745
stress
Bacitracin 0.016 mg/ml
-0.8
-0.4
-0.2
N.D.
-3.2
stress
Bacitracin 0.032 mg/ml
-1.2
-1.1
+0.0
N.D.
-2.1
carbon source
L-Arabinose (C)
-0.1
-0.6
+0.1
N.D.
-3.6
stress
Zinc 1 mM
-0.1
-0.5
-0.1
N.D.
-3.4
stress
A22 0.025 mg/ml
-0.5
-0.0
-0.1
N.D.
-3.5
stress
Chlorite 0.1 mM
-1.2
+0.2
-0.2
N.D.
-2.8
motility
inner cut, R2A soft agar motility assay
-0.4
+0.1
-0.3
N.D.
-3.3
stress
perchlorate 10 mM
-0.4
+0.1
-0.2
N.D.
-3.4
lb
LB
-0.9
-0.9
-0.0
N.D.
-1.6
nitrogen source
L-Histidine (N)
-0.7
+0.2
-0.2
N.D.
-2.5
stress
copper (II) chloride 1 mM
-0.5
+0.7
-0.0
N.D.
-3.3
nitrogen source
L-Leucine (N)
-0.1
-0.1
+0.3
N.D.
-3.1
stress
Cobalt chloride 0.32 mM
-0.3
+0.1
+0.1
N.D.
-2.8
stress
Cobalt chloride 0.32 mM
-0.1
+0.5
-0.1
N.D.
-3.3
carbon source
D-Lactate (C)
+0.9
-0.1
+0.0
N.D.
-3.7
stress
Phosphomycin 0.06 mg/ml
-0.0
+0.7
-0.1
N.D.
-3.4
stress
Aluminum chloride 2 mM
+0.4
+0.0
-0.0
N.D.
-2.9
motility
inner cut, R2A soft agar motility assay
+0.5
+0.1
+0.2
N.D.
-3.2
stress
Sisomicin 0.001 mg/ml
-0.2
+0.7
-0.2
N.D.
-2.6
stress
Bacitracin 0.008 mg/ml
-0.0
+0.5
-0.1
N.D.
-2.7
nitrogen source
L-Alanine (N)
-0.2
+0.9
-0.3
N.D.
-2.6
temperature
LB 30C
+0.6
-0.9
-0.3
N.D.
-1.7
phage
phage 93.2
+0.3
+0.3
+0.1
N.D.
-2.9
stress
Sisomicin 0.0005 mg/ml
+0.6
-0.3
+0.1
N.D.
-2.4
nitrogen source
D-Alanine (N)
-1.4
+1.2
-0.1
N.D.
-1.7
nitrogen source
Uridine (N)
-0.3
+0.9
+0.0
N.D.
-2.6
nitrogen source
L-Phenylalanine (N)
-0.2
+0.8
+0.1
N.D.
-2.3
nitrogen source
L-Isoleucine (N)
-0.3
+1.3
+0.4
N.D.
-2.9
nitrogen source
Ammonium chloride (N)
-0.5
+1.3
-0.3
N.D.
-1.5
stress
Cisplatin 0.0025 mg/ml
+1.2
+0.7
-0.5
N.D.
-2.3
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