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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2737 and Ac3H11_2738 are separated by 4 nucleotides
Ac3H11_2738 and Ac3H11_2739 overlap by 4 nucleotides
Ac3H11_2739 and Ac3H11_2740 overlap by 4 nucleotides
Ac3H11_2740 and Ac3H11_2741 are separated by 287 nucleotides
Ac3H11_2737 - putative inner membrane efflux protein, at 1,036,967 to 1,038,145
_2737
Ac3H11_2738 - Glutathione peroxidase family protein, at 1,038,150 to 1,038,698
_2738
Ac3H11_2739 - FIG00481831: hypothetical protein, at 1,038,695 to 1,039,228
_2739
Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109
_2740
Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302
_2741
Group
Condition
Ac3H11
_2737
Ac3H11
_2738
Ac3H11
_2739
Ac3H11
_2740
Ac3H11
_2741
nitrogen source
L-Alanine (N)
-1.3
-5.3
N.D.
N.D.
-0.2
stress
copper (II) chloride 2 mM
-0.6
-3.4
N.D.
N.D.
-0.4
stress
Paraquat dichloride 0.01 mg/ml
-0.7
-1.2
N.D.
N.D.
-0.1
stress
Nickel (II) chloride 0.6 mM
-0.9
-0.1
N.D.
N.D.
-0.9
nitrogen source
L-Phenylalanine (N)
-0.7
-0.9
N.D.
N.D.
-0.2
nitrogen source
Ammonium chloride (N)
-1.4
+0.2
N.D.
N.D.
-0.5
nitrogen source
L-Isoleucine (N)
-0.8
-0.6
N.D.
N.D.
-0.3
stress
Bacitracin 0.032 mg/ml
+0.6
-0.7
N.D.
N.D.
-1.2
stress
copper (II) chloride 1 mM
-0.3
-0.5
N.D.
N.D.
-0.5
nitrogen source
D-Alanine (N)
-0.0
+0.2
N.D.
N.D.
-1.4
lb
LB
-0.6
-0.7
N.D.
N.D.
+0.2
stress
nitrate 45 mM
+0.2
-0.8
N.D.
N.D.
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.1
+0.1
N.D.
N.D.
+0.1
stress
Bacitracin 0.016 mg/ml
+0.4
-0.4
N.D.
N.D.
-0.8
lb
LB
+0.4
-0.5
N.D.
N.D.
-0.6
carbon source
pyruvate (C)
+0.3
+0.1
N.D.
N.D.
-1.0
pH
LB, pH10
+0.4
-0.6
N.D.
N.D.
-0.3
stress
Nickel (II) chloride 0.8 mM
+0.5
-0.5
N.D.
N.D.
-0.5
stress
Thallium(I) acetate 0.0006 mg/ml
+0.6
-0.9
N.D.
N.D.
-0.0
stress
Chlorite 0.1 mM
+0.4
+0.6
N.D.
N.D.
-1.2
stress
Cephalothin 0.01 mg/ml
+0.1
-0.8
N.D.
N.D.
+0.5
stress
D-Cycloserine 0.05 mg/ml
+1.4
-0.8
N.D.
N.D.
-0.6
stress
Cobalt chloride 0.16 mM
-0.3
+0.7
N.D.
N.D.
-0.2
lb
LB
-0.1
+0.8
N.D.
N.D.
-0.5
stress
sodium fluoride 25 mM
-0.5
+0.3
N.D.
N.D.
+0.5
stress
Cobalt chloride 0.4 mM
-0.1
+1.1
N.D.
N.D.
-0.8
motility
inner cut, R2A soft agar motility assay
-1.2
+1.2
N.D.
N.D.
+0.4
carbon source
D,L-Lactate (C)
-0.3
+0.7
N.D.
N.D.
+0.3
carbon source
pyruvate (C)
+0.6
-0.2
N.D.
N.D.
+0.6
stress
Cisplatin 0.0025 mg/ml
+0.7
+0.4
N.D.
N.D.
+1.2
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