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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2730 and Ac3H11_2731 are separated by 259 nucleotides
Ac3H11_2731 and Ac3H11_2732 overlap by 4 nucleotides
Ac3H11_2732 and Ac3H11_2733 are separated by 55 nucleotides
Ac3H11_2733 and Ac3H11_2734 overlap by 7 nucleotides
Ac3H11_2730 - hypothetical protein, at 1,032,084 to 1,032,266
_2730
Ac3H11_2731 - hypothetical protein, at 1,032,526 to 1,032,951
_2731
Ac3H11_2732 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,032,948 to 1,033,784
_2732
Ac3H11_2733 - MFS transporter, at 1,033,840 to 1,035,060
_2733
Ac3H11_2734 - Dihydroneopterin aldolase (EC 4.1.2.25), at 1,035,054 to 1,035,482
_2734
Group
Condition
Ac3H11
_2730
Ac3H11
_2731
Ac3H11
_2732
Ac3H11
_2733
Ac3H11
_2734
nitrogen source
L-Alanine (N)
-1.8
-0.5
-1.1
+0.9
-0.1
stress
nitrate 100 mM
-1.7
+0.0
-0.6
-0.0
-0.1
stress
Bacitracin 0.008 mg/ml
-2.3
+0.2
-0.2
-0.2
+0.1
nitrogen source
Ammonium chloride (N)
-0.7
-0.8
-0.1
+0.1
-0.1
stress
copper (II) chloride 1 mM
-1.7
+0.4
-0.5
+0.3
+0.1
stress
Doxycycline hyclate 0.000025 mg/ml
-0.9
+0.1
-0.4
-0.3
+0.2
stress
Cobalt chloride 0.32 mM
-1.2
+0.2
-0.3
-0.1
+0.2
lb
LB
-1.0
-0.1
+0.0
-0.3
+0.2
phage
phage 93.2
+0.1
-0.1
+0.2
-0.9
-0.3
stress
nitrate 20 mM
-0.8
-0.1
-0.4
+0.2
+0.1
stress
Tetracycline 0.0001 mg/ml
-0.9
-0.5
-0.1
+0.2
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
-0.5
+0.3
-0.7
-0.0
stress
Cisplatin 0.0025 mg/ml
-0.5
-0.5
-0.2
-0.0
+0.4
carbon source
L-Arabinose (C)
-0.6
-0.3
+0.4
-0.3
+0.0
carbon source
D-Glucose (C)
-0.8
-0.3
+0.2
+0.1
+0.0
stress
Phosphomycin 0.06 mg/ml
-1.1
+0.2
+0.2
+0.1
-0.0
stress
Phosphomycin 0.02 mg/ml
+0.7
-0.4
-0.2
-0.4
-0.1
stress
copper (II) chloride 2 mM
+0.7
-0.3
-0.1
-0.5
+0.2
pH
LB, pH10
+0.5
+0.0
+0.2
-0.5
-0.4
stress
Nickel (II) chloride 0.6 mM
-0.5
-0.3
+0.3
+0.2
+0.3
carbon source
D-Lactate (C)
-0.4
-0.4
+0.5
+0.0
+0.3
stress
perchlorate 10 mM
-0.9
+0.3
+0.4
+0.1
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.5
-1.2
+0.1
+0.9
carbon source
propionate (C)
-0.2
+0.5
+0.4
-0.4
+0.1
carbon source
D-Gluconic Acid (C)
-0.4
-0.3
+0.6
+0.3
+0.2
nitrogen source
L-Histidine (N)
-0.4
+0.5
+0.5
+0.3
-0.2
carbon source
D,L-Lactate (C)
+0.2
-0.1
+0.5
-0.4
+0.5
nitrogen source
D-Alanine (N)
-0.6
+0.5
+0.6
+0.6
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+1.2
+0.3
-0.3
+0.0
-0.1
stress
Cobalt chloride 0.32 mM
+1.0
+0.3
-0.1
-0.0
+0.3
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