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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_271 and Ac3H11_272 are separated by 10 nucleotides
Ac3H11_272 and Ac3H11_273 are separated by 32 nucleotides
Ac3H11_273 and Ac3H11_274 are separated by 33 nucleotides
Ac3H11_274 and Ac3H11_275 are separated by 14 nucleotides
Ac3H11_271 - Topoisomerase IV subunit A (EC 5.99.1.-), at 94,124 to 96,481
_271
Ac3H11_272 - Lytic transglycosylase, catalytic, at 96,492 to 97,355
_272
Ac3H11_273 - Topoisomerase IV subunit B (EC 5.99.1.-), at 97,388 to 99,424
_273
Ac3H11_274 - Probable MFS transporter precursor, at 99,458 to 100,717
_274
Ac3H11_275 - hypothetical protein, at 100,732 to 100,887
_275
Group
Condition
Ac3H11
_271
Ac3H11
_272
Ac3H11
_273
Ac3H11
_274
Ac3H11
_275
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.2
N.D.
+0.2
-0.8
stress
sodium fluoride 25 mM
N.D.
+0.0
N.D.
+0.1
-0.9
motility
inner cut, R2A soft agar motility assay
N.D.
-0.8
N.D.
+0.0
-0.0
carbon source
D-Fructose (C)
N.D.
-0.1
N.D.
+0.1
-0.6
stress
Chlorite 0.1 mM
N.D.
-0.3
N.D.
+0.1
-0.3
stress
A22 0.025 mg/ml
N.D.
-0.1
N.D.
+0.0
-0.5
stress
Bacitracin 0.032 mg/ml
N.D.
+0.1
N.D.
-0.0
-0.6
carbon source
succinate (C)
N.D.
-0.2
N.D.
+0.1
-0.4
carbon source
L-Lactate (C)
N.D.
+0.2
N.D.
+0.0
-0.5
stress
Nickel (II) chloride 0.8 mM
N.D.
+0.3
N.D.
+0.1
-0.5
pH
LB, pH10
N.D.
+0.3
N.D.
+0.1
-0.3
nitrogen source
D-Alanine (N)
N.D.
-0.4
N.D.
+0.2
+0.2
nitrogen source
Ammonium chloride (N)
N.D.
-0.2
N.D.
-0.1
+0.4
pH
LB, pH5
N.D.
-0.2
N.D.
-0.0
+0.3
carbon source
D-Gluconic Acid (C)
N.D.
-0.1
N.D.
-0.1
+0.4
stress
nitrate 100 mM
N.D.
+0.5
N.D.
+0.1
-0.5
nitrogen source
L-Alanine (N)
N.D.
+0.2
N.D.
+0.2
-0.2
lb
LB
N.D.
+0.3
N.D.
+0.1
-0.2
pH
LB, pH7
N.D.
-0.1
N.D.
+0.0
+0.4
motility
inner cut, R2A soft agar motility assay
N.D.
+0.4
N.D.
+0.2
-0.1
stress
syringaldehyde 2.5 mM
N.D.
-0.0
N.D.
+0.2
+0.4
stress
Fusidic 0.001 mg/ml
N.D.
+0.3
N.D.
-0.0
+0.4
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.1
N.D.
+0.4
+0.1
stress
copper (II) chloride 2 mM
N.D.
+0.1
N.D.
+0.0
+0.5
stress
5-Hydroxymethylfurfural 5 mM
N.D.
+0.4
N.D.
+0.1
+0.2
carbon source
D,L-Lactate (C)
N.D.
+0.4
N.D.
+0.0
+0.3
stress
Sisomicin 0.004 mg/ml
N.D.
+0.4
N.D.
+0.0
+0.2
stress
Sisomicin 0.001 mg/ml
N.D.
+0.1
N.D.
+0.1
+0.5
lb
LB
N.D.
+0.7
N.D.
+0.0
+0.1
phage
phage 93.1
N.D.
+0.2
N.D.
+0.0
+0.9
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