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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2713 and Ac3H11_2714 are separated by 51 nucleotides
Ac3H11_2714 and Ac3H11_2715 are separated by 147 nucleotides
Ac3H11_2715 and Ac3H11_2716 are separated by 365 nucleotides
Ac3H11_2716 and Ac3H11_2717 are separated by 219 nucleotides
Ac3H11_2713 - Tricarboxylate transport protein TctC, at 1,014,017 to 1,014,253
_2713
Ac3H11_2714 - Tricarboxylate transport protein TctC, at 1,014,305 to 1,014,988
_2714
Ac3H11_2715 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,015,136 to 1,016,935
_2715
Ac3H11_2716 - BarH, at 1,017,301 to 1,018,608
_2716
Ac3H11_2717 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 1,018,828 to 1,019,817
_2717
Group
Condition
Ac3H11
_2713
Ac3H11
_2714
Ac3H11
_2715
Ac3H11
_2716
Ac3H11
_2717
stress
Cisplatin 0.0025 mg/ml
-3.7
-0.0
+0.2
-0.1
+0.1
stress
nitrite 10 mM
-1.7
-0.1
-0.2
-0.4
-0.4
stress
copper (II) chloride 2 mM
-2.3
-0.0
+0.1
-0.1
-0.3
stress
Sisomicin 0.001 mg/ml
-2.0
-0.1
-0.2
-0.0
-0.2
stress
Cisplatin 0.005 mg/ml
-2.9
+0.1
-0.3
+0.5
+0.3
stress
Nickel (II) chloride 0.8 mM
-2.4
-0.1
+0.0
+0.2
+0.3
carbon source
D-Fructose (C)
-1.7
-0.1
+0.1
+0.0
-0.3
stress
Chlorate 20 mM
-1.6
-0.2
-0.0
-0.1
-0.0
stress
nitrate 100 mM
-2.1
+0.1
+0.0
-0.0
+0.2
lb
LB
-1.5
-0.1
+0.0
-0.3
-0.0
lb
LB
-1.3
+0.1
-0.5
-0.0
-0.0
nitrogen source
L-Threonine (N)
-1.1
+0.0
-0.1
-0.2
-0.1
stress
perchlorate 10 mM
-0.5
-0.1
-0.3
-0.6
+0.1
stress
Bacitracin 0.032 mg/ml
-0.9
-0.2
-0.2
+0.0
-0.1
lb
LB
-1.0
-0.2
+0.2
-0.4
-0.0
stress
nitrite 10 mM
-1.3
-0.2
+0.0
+0.1
-0.1
nitrogen source
L-Alanine (N)
-1.0
-0.1
+0.4
-0.1
-0.5
stress
Dimethyl Sulfoxide 6 vol%
-1.1
-0.0
-0.0
+0.1
-0.2
pH
LB, pH10
-1.7
-0.3
+0.1
+0.2
+0.4
lb
LB
-0.7
-0.4
-0.0
-0.1
+0.2
carbon source
L-Lactate (C)
-0.9
-0.2
-0.1
-0.0
+0.4
carbon source
pyruvate (C)
-0.9
-0.1
+0.1
-0.1
+0.2
pH
LB, pH10
+1.0
-0.3
-0.6
-0.4
-0.4
stress
nitrate 45 mM
-0.8
-0.1
-0.2
+0.1
+0.3
stress
sodium fluoride 20 mM
-1.1
+0.2
+0.1
+0.1
+0.1
nitrogen source
D-Alanine (N)
+0.5
+0.3
-0.4
+0.1
+0.3
phage
phage 93.1
+1.3
-0.0
-0.2
-0.2
+0.0
motility
inner cut, R2A soft agar motility assay
+0.9
-0.2
+0.0
+0.3
-0.0
stress
Cephalothin 0.005 mg/ml
+0.9
+0.1
+0.3
+0.2
+0.2
lb
LB
+1.5
+0.0
+0.0
+0.1
-0.0
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