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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2710 and Ac3H11_2711 are separated by 53 nucleotides
Ac3H11_2711 and Ac3H11_2712 are separated by 864 nucleotides
Ac3H11_2712 and Ac3H11_2713 are separated by 736 nucleotides
Ac3H11_2713 and Ac3H11_2714 are separated by 51 nucleotides
Ac3H11_2710 - short-chain dehydrogenase/reductase SDR, at 1,010,027 to 1,010,764
_2710
Ac3H11_2711 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 1,010,818 to 1,011,579
_2711
Ac3H11_2712 - Transcriptional regulator, IclR family, at 1,012,444 to 1,013,280
_2712
Ac3H11_2713 - Tricarboxylate transport protein TctC, at 1,014,017 to 1,014,253
_2713
Ac3H11_2714 - Tricarboxylate transport protein TctC, at 1,014,305 to 1,014,988
_2714
Group
Condition
Ac3H11
_2710
Ac3H11
_2711
Ac3H11
_2712
Ac3H11
_2713
Ac3H11
_2714
stress
Cisplatin 0.0025 mg/ml
-0.3
-0.1
-0.2
-3.7
-0.0
stress
copper (II) chloride 2 mM
-0.6
-0.0
-0.9
-2.3
-0.0
stress
nitrate 100 mM
-0.5
-0.2
-0.2
-2.1
+0.1
stress
Nickel (II) chloride 0.8 mM
+0.0
-0.0
-0.1
-2.4
-0.1
stress
Cisplatin 0.005 mg/ml
+0.3
+0.0
+0.0
-2.9
+0.1
nitrogen source
L-Threonine (N)
-0.2
-0.3
-0.4
-1.1
+0.0
carbon source
D-Fructose (C)
-0.2
+0.2
-0.2
-1.7
-0.1
stress
Sisomicin 0.001 mg/ml
-0.1
+0.1
+0.4
-2.0
-0.1
stress
nitrite 10 mM
-0.1
-0.1
-0.1
-1.3
-0.2
stress
Chlorate 20 mM
-0.1
+0.0
+0.1
-1.6
-0.2
stress
Bacitracin 0.032 mg/ml
-0.2
-0.1
-0.3
-0.9
-0.2
stress
nitrite 10 mM
-0.1
-0.1
+0.2
-1.7
-0.1
pH
LB, pH10
+0.4
-0.0
-0.1
-1.7
-0.3
lb
LB
-0.1
-0.1
-0.1
-0.7
-0.4
lb
LB
+0.2
-0.0
-0.2
-1.5
-0.1
stress
Cobalt chloride 0.4 mM
-0.2
-0.0
-0.4
-0.7
-0.2
stress
Aluminum chloride 2 mM
-0.3
-0.0
-0.0
-1.0
-0.1
stress
Aluminum chloride 4 mM
-0.2
-0.0
-0.3
-0.7
-0.2
lb
LB
-0.3
+0.1
+0.0
-1.3
+0.1
lb
LB
-0.0
-0.0
-0.1
-1.0
-0.2
nitrogen source
Ammonium chloride (N)
-0.1
+0.2
-1.1
-0.4
+0.1
nitrogen source
L-Alanine (N)
+0.4
-0.4
-0.2
-1.0
-0.1
motility
inner cut, R2A soft agar motility assay
+0.1
+0.3
-1.2
+0.0
-0.2
carbon source
pyruvate (C)
+0.1
-0.1
+0.2
-0.9
-0.1
carbon source
L-Lactate (C)
+0.2
-0.2
+0.3
-0.9
-0.2
pH
LB, pH10
+0.0
-0.2
-0.2
+1.0
-0.3
nitrogen source
D-Alanine (N)
+0.1
+0.2
-0.6
+0.5
+0.3
motility
inner cut, R2A soft agar motility assay
-0.0
+0.1
+0.4
+0.9
-0.2
phage
phage 93.1
-0.1
-0.0
+0.0
+1.3
-0.0
lb
LB
-0.1
-0.1
+0.2
+1.5
+0.0
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