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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2651 and Ac3H11_2652 overlap by 4 nucleotides
Ac3H11_2652 and Ac3H11_2653 are separated by 1341 nucleotides
Ac3H11_2653 and Ac3H11_2654 are separated by 10 nucleotides
Ac3H11_2654 and Ac3H11_2655 are separated by 128 nucleotides
Ac3H11_2651 - hypothetical protein, at 944,381 to 944,656
_2651
Ac3H11_2652 - Rod shape determination protein, at 944,653 to 945,684
_2652
Ac3H11_2653 - Cys-tRNA(Pro) deacylase YbaK, at 947,026 to 948,024
_2653
Ac3H11_2654 - putative HNS-like transcription regulator protein, at 948,035 to 948,364
_2654
Ac3H11_2655 - hypothetical protein, at 948,493 to 948,702
_2655
Group
Condition
Ac3H11
_2651
Ac3H11
_2652
Ac3H11
_2653
Ac3H11
_2654
Ac3H11
_2655
nitrogen source
L-Alanine (N)
-0.8
-0.3
-0.7
-0.4
-2.0
stress
perchlorate 10 mM
+0.2
+0.4
+0.3
-2.6
-1.6
stress
Cisplatin 0.0025 mg/ml
+0.2
+0.1
-0.1
-1.9
-1.6
nitrogen source
Ammonium chloride (N)
-0.0
+1.0
-0.6
-2.8
-0.2
lb
LB
-0.1
-0.5
+0.3
-2.8
+0.5
carbon source
a-Ketoglutaric (C)
-0.4
+0.1
-0.3
-1.1
-0.6
carbon source
D-Gluconic Acid (C)
+0.2
-0.3
-0.1
-0.7
-1.1
stress
Cephalothin 0.025 mg/ml
+0.3
-0.4
+0.0
-0.7
-1.0
stress
Cobalt chloride 0.32 mM
-0.2
+0.1
-0.1
-0.2
-1.4
carbon source
succinate (C)
-0.4
-0.1
-0.2
-1.4
+0.6
motility
inner cut, R2A soft agar motility assay
+0.1
-1.0
-0.1
-0.7
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.7
-0.3
-0.3
-1.2
-0.2
carbon source
L-Lactate (C)
+0.3
+0.1
-0.1
-0.4
-1.1
stress
perchlorate 25 mM
-0.3
-0.6
-0.3
-0.4
+0.7
stress
nitrate 20 mM
+0.1
+0.3
+0.1
-1.2
+0.3
carbon source
L-Lactate (C)
+0.3
+0.6
-0.1
-0.2
-0.8
carbon source
pyruvate (C)
+0.4
+0.2
-0.5
+0.6
-0.7
motility
inner cut, R2A soft agar motility assay
+0.8
-0.2
+0.3
-0.0
-0.7
temperature
LB 30C
+0.3
-0.8
+0.0
+0.5
+0.4
phage
phage 93.1
+0.3
-0.3
+0.3
-0.2
+0.7
pH
LB, pH10
-1.2
-0.3
+0.3
+1.7
+0.4
temperature
LB 23C
+0.3
-0.4
-0.1
+0.7
+0.5
carbon source
propionate (C)
-0.1
+1.2
-0.1
-0.5
+0.5
stress
Sisomicin 0.004 mg/ml
-0.3
+0.1
+0.0
-0.1
+1.4
stress
Paraquat dichloride 0.01 mg/ml
+0.8
+0.3
-0.2
-0.3
+0.7
stress
Fusidic 0.001 mg/ml
+0.3
-0.4
+0.1
+0.4
+0.9
stress
copper (II) chloride 2 mM
+0.3
+0.3
-0.4
+0.4
+0.8
pH
LB, pH10
+0.3
-0.5
-0.1
+1.3
+0.6
stress
Phosphomycin 0.02 mg/ml
-0.0
+0.1
+0.0
+0.5
+1.2
motility
inner cut, R2A soft agar motility assay
+1.0
+0.1
-0.4
-0.1
+1.7
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