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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2592 and Ac3H11_2593 are separated by 120 nucleotides
Ac3H11_2593 and Ac3H11_2594 are separated by 119 nucleotides
Ac3H11_2594 and Ac3H11_2595 are separated by 36 nucleotides
Ac3H11_2595 and Ac3H11_2596 are separated by 50 nucleotides
Ac3H11_2592 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5, at 873,166 to 874,470
_2592
Ac3H11_2593 - Protein crcB homolog, at 874,591 to 874,974
_2593
Ac3H11_2594 - FIG01199081: hypothetical protein, at 875,094 to 875,957
_2594
Ac3H11_2595 - extensin-like protein, at 875,994 to 876,953
_2595
Ac3H11_2596 - hypothetical protein, at 877,004 to 878,287
_2596
Group
Condition
Ac3H11
_2592
Ac3H11
_2593
Ac3H11
_2594
Ac3H11
_2595
Ac3H11
_2596
stress
sodium fluoride 25 mM
+0.1
-6.1
-0.1
-0.1
-0.1
stress
sodium fluoride 35 mM
-0.0
-6.3
-0.0
-0.1
+0.0
stress
sodium fluoride 20 mM
+0.2
-4.2
-0.1
+0.2
+0.1
stress
sodium fluoride 50 mM
+0.2
-3.5
-0.2
-0.1
-0.1
nitrogen source
Uridine (N)
+0.3
+0.5
-3.6
-0.0
-0.1
phage
phage 93.1
-0.1
-1.5
-0.7
-0.1
-0.0
stress
Cisplatin 0.0025 mg/ml
-0.7
-1.7
+0.3
-0.0
+0.0
stress
Paraquat dichloride 0.01 mg/ml
-0.3
-1.1
-0.6
+0.0
+0.1
nitrogen source
L-Threonine (N)
+0.0
-1.4
-0.3
+0.0
-0.2
stress
Cephalothin 0.025 mg/ml
+0.1
-1.6
-0.1
-0.1
-0.1
stress
syringaldehyde 2.5 mM
-0.2
-1.1
-0.2
-0.1
+0.1
stress
Aluminum chloride 2 mM
+0.1
-1.1
-0.4
-0.1
+0.0
stress
Cisplatin 0.005 mg/ml
-0.1
-1.2
-0.2
-0.1
+0.1
carbon source
L-Glutamine (C)
-0.4
-0.8
-0.2
+0.0
+0.1
stress
A22 0.025 mg/ml
-0.4
-1.4
+0.5
-0.0
+0.0
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
-0.8
-0.2
-0.2
-0.2
stress
Nickel (II) chloride 0.8 mM
+0.1
-0.9
-0.4
-0.0
+0.1
stress
Bacitracin 0.008 mg/ml
-0.1
-1.1
+0.3
-0.3
+0.2
motility
inner cut, R2A soft agar motility assay
-0.6
-1.6
+1.1
-0.0
+0.2
stress
Chlorite 0.1 mM
+0.2
+0.1
-1.0
+0.1
-0.3
stress
Dimethyl Sulfoxide 6 vol%
+0.1
-1.1
-0.2
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
-0.5
-0.7
+0.8
-0.1
-0.1
stress
copper (II) chloride 2 mM
+0.2
+0.2
-0.6
-0.2
+0.3
nitrogen source
D-Alanine (N)
+0.7
-0.8
+0.3
-0.1
-0.1
carbon source
D-Ribose (C)
-0.1
+0.8
-0.7
+0.2
+0.1
carbon source
a-Ketoglutaric (C)
-0.2
+0.6
-0.4
+0.4
-0.2
nitrogen source
L-Alanine (N)
+0.4
+0.9
-0.4
+0.2
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.6
+0.6
+0.4
+0.0
-0.1
nitrogen source
Ammonium chloride (N)
+1.0
+0.2
+0.0
+0.5
-0.0
motility
inner cut, R2A soft agar motility assay
+0.1
+1.1
+0.4
+0.1
+0.0
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