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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2580 and Ac3H11_2581 are separated by 40 nucleotides
Ac3H11_2581 and Ac3H11_2582 are separated by 386 nucleotides
Ac3H11_2582 and Ac3H11_2583 overlap by 10 nucleotides
Ac3H11_2583 and Ac3H11_2584 overlap by 4 nucleotides
Ac3H11_2580 - Heat shock (predicted periplasmic) protein YciM, precursor, at 858,815 to 859,972
_2580
Ac3H11_2581 - Flagellar hook-length control protein FliK, at 860,013 to 860,477
_2581
Ac3H11_2582 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 860,864 to 863,830
_2582
Ac3H11_2583 - Na(+) H(+) antiporter subunit C, at 863,821 to 864,186
_2583
Ac3H11_2584 - Na(+) H(+) antiporter subunit D, at 864,183 to 865,910
_2584
Group
Condition
Ac3H11
_2580
Ac3H11
_2581
Ac3H11
_2582
Ac3H11
_2583
Ac3H11
_2584
pH
LB, pH10
N.D.
-0.0
-2.9
-1.8
-3.0
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-1.3
-0.7
-3.3
-0.9
stress
sodium fluoride 50 mM
N.D.
+0.3
-1.7
-3.3
-1.5
nitrogen source
L-Isoleucine (N)
N.D.
-0.0
-1.2
-3.5
-1.3
pH
LB, pH10
N.D.
-0.1
-2.2
-1.4
-2.0
pH
LB, pH9
N.D.
+0.1
-1.4
-2.8
-1.3
motility
inner cut, R2A soft agar motility assay
N.D.
-0.1
-0.0
-3.8
-0.1
stress
perchlorate 25 mM
N.D.
-0.2
-0.3
-3.3
-0.1
motility
inner cut, R2A soft agar motility assay
N.D.
+0.3
-0.4
-4.0
+0.3
stress
Cisplatin 0.005 mg/ml
N.D.
+0.2
-0.4
-2.6
-0.9
nitrogen source
L-tyrosine (N)
N.D.
+0.6
-1.4
-1.4
-1.2
nitrogen source
L-Arginine (N)
N.D.
+0.0
-0.4
-2.0
-0.6
stress
Doxycycline hyclate 0.000025 mg/ml
N.D.
+0.1
-0.8
-1.5
-0.8
stress
Tetracycline 0.0001 mg/ml
N.D.
+0.2
-1.2
-0.9
-1.0
stress
Nickel (II) chloride 0.6 mM
N.D.
-0.6
-0.8
-0.6
-0.7
stress
A22 0.025 mg/ml
N.D.
+0.1
-0.6
-1.1
-0.9
stress
sodium fluoride 25 mM
N.D.
+0.1
-0.8
-1.1
-0.7
carbon source
L-Glutamine (C)
N.D.
+0.0
-0.1
-2.0
-0.2
lb
LB
N.D.
+0.3
-0.2
-1.6
-0.6
stress
Phosphomycin 0.06 mg/ml
N.D.
-0.2
-0.4
-1.3
-0.3
stress
sodium fluoride 20 mM
N.D.
+0.2
-0.7
-1.0
-0.6
motility
inner cut, R2A soft agar motility assay
N.D.
+0.6
-0.1
-2.4
+0.0
nitrogen source
L-Glutamine (N)
N.D.
+0.3
-0.3
-1.1
-0.3
stress
Chlorite 0.1 mM
N.D.
+0.5
-0.5
-0.5
-0.6
nitrogen source
D-Alanine (N)
N.D.
-0.6
-0.5
+1.3
-1.0
nitrogen source
L-Alanine (N)
N.D.
+0.4
-0.4
+0.9
-1.4
nitrogen source
L-Leucine (N)
N.D.
+0.3
-0.4
+1.0
-1.0
stress
nitrate 100 mM
N.D.
-0.1
-0.2
+1.9
-0.1
stress
Cobalt chloride 0.32 mM
N.D.
+0.6
-0.0
+1.6
-0.1
nitrogen source
Ammonium chloride (N)
N.D.
+0.7
+0.0
+1.3
+0.3
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