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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2559 and Ac3H11_2560 are separated by 22 nucleotides
Ac3H11_2560 and Ac3H11_2561 overlap by 4 nucleotides
Ac3H11_2561 and Ac3H11_2562 are separated by 112 nucleotides
Ac3H11_2562 and Ac3H11_2563 are separated by 370 nucleotides
Ac3H11_2559 - Histidine utilization repressor, at 837,490 to 838,302
_2559
Ac3H11_2560 - ABC transporter for L-Histidine, ATPase component
(from data)
, at 838,325 to 839,104
_2560
Ac3H11_2561 - ABC transporter for L-Histidine, permease component 2
(from data)
, at 839,101 to 839,859
_2561
Ac3H11_2562 - ABC transporter for L-Histidine, periplasmic substrate-binding component 2
(from data)
, at 839,972 to 840,937
_2562
Ac3H11_2563 - Adenylate cyclase (EC 4.6.1.1), at 841,308 to 842,699
_2563
Group
Condition
Ac3H11
_2559
Ac3H11
_2560
Ac3H11
_2561
Ac3H11
_2562
Ac3H11
_2563
nitrogen source
L-Histidine (N)
-5.4
-6.1
-4.7
-4.3
-0.1
nitrogen source
Ammonium chloride (N)
-1.3
-0.3
+0.4
-0.2
-3.4
stress
Sisomicin 0.001 mg/ml
-4.4
-0.3
+0.3
+0.0
+0.2
stress
Cisplatin 0.005 mg/ml
-4.0
-0.0
+0.2
+0.2
+0.1
nitrogen source
L-Threonine (N)
-1.0
-0.5
+0.1
-0.3
-1.9
stress
Phosphomycin 0.06 mg/ml
-2.7
+0.1
-0.1
+0.1
+0.0
stress
Chlorite 0.1 mM
-2.9
-0.3
+0.5
+0.2
+0.0
stress
perchlorate 10 mM
-3.2
+0.4
+0.3
+0.2
-0.1
lb
LB
-2.4
+0.0
+0.1
-0.0
+0.0
stress
2-Furfuraldehyde 0.06 vol%
-2.0
-0.1
-0.1
-0.0
-0.1
stress
Fusidic 0.001 mg/ml
-2.4
+0.0
+0.1
+0.1
+0.0
stress
Nickel (II) chloride 0.6 mM
-0.8
-0.6
-0.5
-0.4
+0.2
stress
D-Cycloserine 0.05 mg/ml
-1.6
-0.4
+0.0
-0.3
+0.2
stress
Phosphomycin 0.02 mg/ml
-1.9
-0.3
-0.0
+0.1
+0.1
stress
perchlorate 25 mM
-2.1
+0.1
+0.2
-0.2
+0.0
stress
Cisplatin 0.0025 mg/ml
-1.7
+0.2
+0.2
-0.2
-0.4
stress
Bacitracin 0.008 mg/ml
-1.7
-0.3
+0.0
+0.1
-0.1
carbon source
propionate (C)
-0.4
+0.0
-0.1
+0.1
-1.6
stress
A22 0.025 mg/ml
-1.9
+0.2
-0.0
+0.1
-0.0
lb
LB
-1.8
+0.1
+0.4
-0.2
+0.0
stress
Paraquat dichloride 0.01 mg/ml
-1.9
+0.1
+0.1
+0.0
+0.2
nitrogen source
L-tyrosine (N)
-1.4
-0.4
+0.2
-0.1
+0.2
lb
LB
-1.7
+0.2
+0.1
+0.3
+0.0
pH
LB, pH10
-0.2
+0.5
-0.6
-0.4
-0.3
stress
Bacitracin 0.016 mg/ml
-1.3
-0.1
+0.1
+0.3
-0.0
stress
Bacitracin 0.032 mg/ml
-1.7
+0.3
+0.2
+0.2
+0.1
nitrogen source
L-Alanine (N)
-0.1
-0.6
+0.5
+0.3
-0.8
nitrogen source
D-Alanine (N)
-0.3
-0.1
+0.4
+0.3
-0.8
carbon source
a-Ketoglutaric (C)
-1.2
-0.1
+0.0
+0.9
+0.0
stress
copper (II) chloride 2 mM
+1.5
+0.0
+0.1
-0.4
+0.3
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