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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_2548 and Ac3H11_2549 are separated by 36 nucleotides
Ac3H11_2549 and Ac3H11_2550 overlap by 4 nucleotides
Ac3H11_2550 and Ac3H11_2551 are separated by 77 nucleotides
Ac3H11_2551 and Ac3H11_2552 are separated by 21 nucleotides
Ac3H11_2548 - N-formylglutamate deformylase (EC 3.5.1.68)
(from data)
, at 825,657 to 826,469
_2548
Ac3H11_2549 - Formiminoglutamic iminohydrolase (EC 3.5.3.13)
(from data)
, at 826,506 to 827,900
_2549
Ac3H11_2550 - Imidazolonepropionase (EC 3.5.2.7)
(from data)
, at 827,897 to 829,186
_2550
Ac3H11_2551 - Conserved hypothetical protein (perhaps related to histidine degradation), at 829,264 to 829,878
_2551
Ac3H11_2552 - Phytanoyl-CoA dioxygenase, at 829,900 to 830,793
_2552
Group
Condition
Ac3H11
_2548
Ac3H11
_2549
Ac3H11
_2550
Ac3H11
_2551
Ac3H11
_2552
nitrogen source
L-Histidine (N)
-4.8
-7.6
-5.1
-2.9
-4.2
pH
LB, pH10
-0.2
-1.7
+0.0
-4.1
-0.1
nitrogen source
L-Arginine (N)
+0.0
-0.3
-0.1
-2.8
+0.2
pH
LB, pH10
-0.1
-1.8
-0.2
-0.6
+0.0
temperature
LB 30C
-0.0
-0.2
-0.1
-1.9
-0.4
phage
phage 93.1
+0.1
-0.4
+0.3
-1.8
-0.1
nitrogen source
L-Proline (N)
+0.1
-0.2
+0.1
-1.5
-0.2
nitrogen source
D-Alanine (N)
+0.0
-0.7
-0.2
-1.2
+0.4
stress
Nickel (II) chloride 0.8 mM
-0.1
-0.1
+0.1
-1.2
-0.3
stress
copper (II) chloride 1 mM
-0.0
+0.6
+0.2
-2.5
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.1
-0.4
-1.5
+0.4
stress
copper (II) chloride 2 mM
-0.3
+0.7
-0.2
-1.9
+0.3
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
-0.2
-1.1
+0.1
nitrogen source
L-Threonine (N)
-0.0
-0.3
-0.2
-1.1
+0.3
stress
Bacitracin 0.016 mg/ml
+0.1
+0.5
-0.5
-1.2
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.3
+0.6
+0.1
-1.9
+0.3
lb
LB
-0.1
+0.5
-0.2
-1.1
-0.1
carbon source
L-Lactate (C)
+0.2
-0.2
+0.0
-1.3
+0.2
motility
inner cut, R2A soft agar motility assay
+0.2
+0.0
-0.5
-1.1
+0.6
stress
perchlorate 10 mM
-0.3
+0.3
-0.1
-1.0
+0.5
stress
Cisplatin 0.005 mg/ml
-0.3
+0.5
-0.3
-0.9
+0.4
stress
Zinc 1 mM
-0.1
+0.7
-0.2
-0.8
+0.1
phage
phage 93.1
+0.2
+0.0
+0.1
-1.0
+0.5
stress
Phosphomycin 0.02 mg/ml
-0.1
+0.6
-0.2
-0.7
+0.3
stress
Chlorite 0.1 mM
-0.1
+0.8
-0.6
+0.4
+0.0
stress
syringaldehyde 2.5 mM
-0.2
+0.7
-0.3
+0.5
+0.1
stress
Sisomicin 0.001 mg/ml
-0.2
+0.9
-0.3
+0.9
+0.0
stress
Paraquat dichloride 0.01 mg/ml
-0.3
+0.4
+0.1
+1.7
-0.6
lb
LB
-0.2
+0.2
+0.2
+1.0
+0.2
stress
nitrate 45 mM
+0.1
+0.2
+0.2
+1.0
+0.3
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