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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2537 and Ac3H11_2538 are separated by 68 nucleotides
Ac3H11_2538 and Ac3H11_2539 are separated by 141 nucleotides
Ac3H11_2539 and Ac3H11_2981 are separated by 110 nucleotides
Ac3H11_2981 and Ac3H11_2540 are separated by 217 nucleotides
Ac3H11_2537 - Cell division protein BolA, at 815,363 to 815,629
_2537
Ac3H11_2538 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8), at 815,698 to 816,483
_2538
Ac3H11_2539 - Mlr1315 protein, at 816,625 to 817,491
_2539
Ac3H11_2981 - tRNA-Pro-TGG, at 817,602 to 817,675
_2981
Ac3H11_2540 - Translation initiation factor 1, at 817,893 to 818,141
_2540
Group
Condition
Ac3H11
_2537
Ac3H11
_2538
Ac3H11
_2539
Ac3H11
_2981
Ac3H11
_2540
pH
LB, pH5
-0.2
N.D.
-3.6
N.D.
N.D.
pH
LB, pH5
-0.1
N.D.
-3.6
N.D.
N.D.
stress
copper (II) chloride 1 mM
+0.1
N.D.
-1.6
N.D.
N.D.
stress
copper (II) chloride 1 mM
-0.2
N.D.
-1.2
N.D.
N.D.
stress
Zinc 1 mM
-0.3
N.D.
-1.0
N.D.
N.D.
stress
copper (II) chloride 2 mM
+0.4
N.D.
-1.6
N.D.
N.D.
pH
LB, pH9
-0.5
N.D.
-0.5
N.D.
N.D.
stress
Nickel (II) chloride 0.8 mM
-0.4
N.D.
-0.5
N.D.
N.D.
stress
Bacitracin 0.016 mg/ml
-0.2
N.D.
-0.7
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
-0.4
N.D.
-0.5
N.D.
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.3
N.D.
-0.6
N.D.
N.D.
stress
Phosphomycin 0.06 mg/ml
+0.1
N.D.
-0.9
N.D.
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-0.2
N.D.
-0.6
N.D.
N.D.
lb
LB
+0.3
N.D.
-1.0
N.D.
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.1
N.D.
-0.8
N.D.
N.D.
stress
Sisomicin 0.0005 mg/ml
+0.3
N.D.
-1.0
N.D.
N.D.
lb
LB
-0.1
N.D.
-0.6
N.D.
N.D.
lb
LB
-0.3
N.D.
-0.3
N.D.
N.D.
stress
nitrite 10 mM
+0.1
N.D.
-0.6
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
+0.2
N.D.
-0.5
N.D.
N.D.
stress
Cobalt chloride 0.32 mM
+0.2
N.D.
-0.5
N.D.
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.4
N.D.
-0.6
N.D.
N.D.
stress
Phosphomycin 0.02 mg/ml
+0.2
N.D.
-0.5
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.3
N.D.
-0.6
N.D.
N.D.
stress
Bacitracin 0.008 mg/ml
+0.3
N.D.
-0.5
N.D.
N.D.
pH
LB, pH10
+0.4
N.D.
-0.6
N.D.
N.D.
stress
Chlorate 20 mM
+0.6
N.D.
-0.8
N.D.
N.D.
nitrogen source
Uridine (N)
+0.3
N.D.
-0.4
N.D.
N.D.
stress
perchlorate 10 mM
+0.4
N.D.
-0.4
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+0.8
N.D.
-0.1
N.D.
N.D.
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