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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_2522 and Ac3H11_2523 are separated by 40 nucleotides
Ac3H11_2523 and Ac3H11_2524 are separated by 190 nucleotides
Ac3H11_2524 and Ac3H11_2525 are separated by 1 nucleotides
Ac3H11_2525 and Ac3H11_2526 are separated by 2 nucleotides
Ac3H11_2522 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 798,397 to 799,572
_2522
Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712
_2523
Ac3H11_2524 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 801,903 to 802,598
_2524
Ac3H11_2525 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 802,600 to 803,385
_2525
Ac3H11_2526 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 803,388 to 804,713
_2526
Group
Condition
Ac3H11
_2522
Ac3H11
_2523
Ac3H11
_2524
Ac3H11
_2525
Ac3H11
_2526
stress
Cisplatin 0.005 mg/ml
-0.1
-0.1
-2.7
-2.3
-0.5
lb
LB
-0.3
+0.0
-1.5
-1.2
-1.2
stress
Bacitracin 0.008 mg/ml
-0.3
+0.1
-1.0
-1.1
-0.8
stress
Phosphomycin 0.06 mg/ml
-0.3
+0.2
-1.4
-1.3
-0.2
stress
Cisplatin 0.0025 mg/ml
-0.1
-0.1
-1.1
-1.4
-0.4
stress
Cobalt chloride 0.32 mM
-0.2
+0.0
-0.9
-0.8
-0.9
nitrogen source
L-Leucine (N)
+0.1
+0.2
-1.4
-0.7
-0.9
nitrogen source
L-Alanine (N)
+0.3
-0.4
-0.6
-0.5
-1.5
stress
Paraquat dichloride 0.01 mg/ml
+0.1
+0.1
-1.5
-0.4
-1.0
stress
copper (II) chloride 1 mM
-0.4
-0.0
-0.1
-1.0
-1.1
lb
LB
-0.4
-0.1
-1.0
-0.6
-0.6
stress
Zinc 1 mM
+0.2
-0.0
-1.6
-0.5
-0.4
stress
Sisomicin 0.001 mg/ml
+0.0
+0.1
-1.3
-0.5
-0.6
stress
Nickel (II) chloride 0.6 mM
-0.1
-0.0
-0.8
-0.6
-0.5
phage
phage 93.1
-0.2
+0.1
-1.0
-0.4
-0.4
stress
Bacitracin 0.032 mg/ml
+0.1
+0.2
-0.8
-1.1
-0.5
nitrogen source
L-Phenylalanine (N)
-0.1
-0.1
-0.5
-0.6
-0.5
lb
LB
+0.1
-0.1
-0.6
-0.8
-0.3
stress
perchlorate 10 mM
+0.0
+0.2
-0.4
-0.9
-0.4
carbon source
L-Lactate (C)
-0.1
+0.1
-0.8
-0.8
+0.1
stress
Chlorite 0.1 mM
+0.3
-0.2
-0.8
-0.5
-0.2
stress
nitrite 10 mM
+0.1
+0.2
-0.6
-0.9
-0.2
carbon source
succinate (C)
-0.3
+0.3
-0.6
-0.3
-0.5
stress
nitrate 45 mM
+0.1
+0.0
-0.7
-0.2
-0.6
carbon source
propionate (C)
+0.1
+2.9
-1.4
-1.2
-1.2
stress
Nickel (II) chloride 0.8 mM
+0.0
-0.2
-0.5
+0.6
+0.5
nitrogen source
D-Alanine (N)
+0.1
-0.3
+1.1
-0.3
+0.4
pH
LB, pH9
+0.0
+0.2
+1.2
+1.4
+0.7
pH
LB, pH10
+0.2
+0.7
+2.2
+1.7
+2.2
pH
LB, pH10
+0.0
+1.2
+2.4
+2.5
+2.2
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