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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2511 and Ac3H11_2512 are separated by 50 nucleotides
Ac3H11_2512 and Ac3H11_2513 are separated by 0 nucleotides
Ac3H11_2513 and Ac3H11_2514 are separated by 25 nucleotides
Ac3H11_2514 and Ac3H11_2515 are separated by 9 nucleotides
Ac3H11_2511 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 788,193 to 788,783
_2511
Ac3H11_2512 - Short-chain dehydrogenase/reductase SDR, at 788,834 to 789,739
_2512
Ac3H11_2513 - Probable glutathione s-transferase protein (EC 2.5.1.18), at 789,740 to 790,675
_2513
Ac3H11_2514 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 790,701 to 792,362
_2514
Ac3H11_2515 - ElaA protein, at 792,372 to 792,836
_2515
Group
Condition
Ac3H11
_2511
Ac3H11
_2512
Ac3H11
_2513
Ac3H11
_2514
Ac3H11
_2515
phage
phage 93.2
-0.2
-0.0
+0.2
+0.3
-1.6
motility
inner cut, R2A soft agar motility assay
+0.2
-0.0
-0.4
+0.1
-1.0
lb
LB
-0.7
+0.0
-0.3
-0.1
-0.1
stress
syringaldehyde 2.5 mM
-0.6
+0.1
-0.4
+0.1
-0.3
pH
LB, pH10
-0.9
-0.1
+0.1
+0.2
-0.3
pH
LB, pH10
-0.1
+0.1
-0.5
+0.3
-0.8
stress
nitrate 20 mM
-0.4
-0.0
+0.1
+0.2
-0.5
stress
perchlorate 25 mM
-0.6
+0.2
-0.0
+0.1
-0.4
stress
nitrite 10 mM
+0.3
-0.1
-0.2
+0.1
-0.8
nitrogen source
L-Isoleucine (N)
+0.0
-0.0
+0.1
+0.4
-1.0
stress
Cobalt chloride 0.32 mM
-0.5
-0.0
-0.1
-0.1
+0.4
nitrogen source
D-Alanine (N)
+0.6
+0.1
-0.5
+0.3
-0.7
carbon source
succinate (C)
+0.2
-0.1
-0.1
+0.3
-0.5
stress
nitrate 100 mM
-0.4
+0.0
+0.1
-0.3
+0.4
motility
inner cut, R2A soft agar motility assay
-0.5
+0.0
+0.5
-0.4
+0.1
pH
LB, pH8
-0.5
-0.0
-0.1
+0.1
+0.6
motility
inner cut, R2A soft agar motility assay
-0.5
+0.1
+0.1
+0.0
+0.4
nitrogen source
L-Threonine (N)
+0.0
+0.1
+0.3
+0.3
-0.4
nitrogen source
L-Leucine (N)
+0.5
+0.3
+0.1
+0.1
-0.3
carbon source
L-Malic (C)
+0.6
+0.1
+0.1
+0.3
-0.3
carbon source
D-Glucose (C)
-0.2
+0.1
+0.2
-0.0
+0.6
carbon source
succinate (C)
-0.2
-0.1
+0.5
+0.1
+0.4
stress
Cisplatin 0.005 mg/ml
+0.4
+0.2
-0.1
+0.4
-0.1
carbon source
D-Galactose (C)
+0.5
+0.1
+0.1
+0.3
-0.1
lb
LB
+0.2
+0.1
-0.1
-0.2
+0.8
pH
LB, pH5
+0.4
+0.0
+0.1
-0.0
+0.6
nitrogen source
L-Arginine (N)
+0.5
-0.0
+0.2
+0.2
+0.4
phage
phage 93.1
+0.3
+0.0
+0.1
+0.4
+0.6
stress
Cisplatin 0.0025 mg/ml
+0.6
+0.1
+0.3
-0.1
+0.7
nitrogen source
Ammonium chloride (N)
+0.4
-0.0
+0.3
+0.5
+0.8
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