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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2495 and Ac3H11_2496 are separated by 65 nucleotides
Ac3H11_2496 and Ac3H11_2497 are separated by 97 nucleotides
Ac3H11_2497 and Ac3H11_2498 are separated by 217 nucleotides
Ac3H11_2498 and Ac3H11_2499 are separated by 119 nucleotides
Ac3H11_2495 - Lipase-like enzyme, at 761,430 to 762,392
_2495
Ac3H11_2496 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 762,458 to 763,327
_2496
Ac3H11_2497 - Alcohol dehydrogenase (EC 1.1.1.1), at 763,425 to 764,561
_2497
Ac3H11_2498 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 764,779 to 767,640
_2498
Ac3H11_2499 - FIG00537881: hypothetical protein, at 767,760 to 768,971
_2499
Group
Condition
Ac3H11
_2495
Ac3H11
_2496
Ac3H11
_2497
Ac3H11
_2498
Ac3H11
_2499
nitrogen source
L-Alanine (N)
-0.1
-0.1
-0.6
-0.2
+0.0
stress
Cisplatin 0.005 mg/ml
+0.2
-0.4
-0.0
-0.3
+0.0
lb
LB
-0.2
+0.3
-0.2
-0.3
-0.1
stress
nitrate 100 mM
+0.3
-0.2
-0.1
-0.1
-0.4
pH
LB, pH10
-0.2
-0.1
-0.3
-0.2
+0.2
stress
Sisomicin 0.001 mg/ml
-0.2
+0.0
-0.1
-0.3
+0.2
carbon source
D-Galactose (C)
-0.1
+0.2
+0.1
-0.6
-0.0
nitrogen source
Ammonium chloride (N)
-0.0
-0.3
+0.1
-0.3
+0.3
stress
Cobalt chloride 0.16 mM
-0.1
+0.6
+0.1
-0.7
-0.1
phage
phage 93.1
+0.3
+0.2
-0.0
-0.2
-0.3
carbon source
D-Mannose (C)
+0.2
+0.2
-0.0
-0.4
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.4
+0.4
-0.0
-0.2
+0.2
stress
Sisomicin 0.0005 mg/ml
-0.1
+0.4
+0.3
-0.6
-0.0
stress
Zinc 1 mM
+0.2
+0.1
-0.2
-0.3
+0.2
stress
Aluminum chloride 2 mM
-0.2
+0.5
-0.0
-0.3
+0.1
stress
perchlorate 25 mM
+0.2
+0.4
-0.2
-0.1
-0.2
stress
sodium fluoride 20 mM
+0.2
-0.3
+0.3
-0.1
+0.2
stress
copper (II) chloride 2 mM
+0.1
+0.5
-0.0
-0.3
-0.2
nitrogen source
L-Threonine (N)
-0.3
+0.4
+0.0
-0.1
+0.2
lb
LB
+0.0
+0.5
+0.3
-0.6
-0.0
carbon source
D-Fructose (C)
+0.1
+0.2
-0.0
-0.3
+0.3
stress
copper (II) chloride 1 mM
-0.0
+0.3
+0.1
-0.3
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.6
+0.2
-0.5
+0.1
stress
A22 0.025 mg/ml
+0.0
+0.4
+0.2
-0.4
+0.1
stress
Cobalt chloride 0.32 mM
+0.0
+0.6
+0.4
-0.8
+0.2
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.5
+0.3
-0.7
+0.3
lb
LB
-0.1
+0.6
+0.4
-0.7
+0.1
phage
phage 93.1
-0.2
+0.4
-0.0
-0.0
+0.3
motility
inner cut, R2A soft agar motility assay
-0.0
+0.1
+0.6
+0.2
-0.2
motility
inner cut, R2A soft agar motility assay
-0.2
+1.1
+0.2
-0.2
-0.2
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