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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2427 and Ac3H11_2428 are separated by 77 nucleotides
Ac3H11_2428 and Ac3H11_2429 are separated by 223 nucleotides
Ac3H11_2429 and Ac3H11_2430 are separated by 223 nucleotides
Ac3H11_2430 and Ac3H11_2431 are separated by 362 nucleotides
Ac3H11_2427 - Threonine dehydratase, catabolic (EC 4.3.1.19), at 685,508 to 686,512
_2427
Ac3H11_2428 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 686,590 to 687,219
_2428
Ac3H11_2429 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 687,443 to 688,453
_2429
Ac3H11_2430 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 688,677 to 689,648
_2430
Ac3H11_2431 - ABC transporter ATP-binding protein, at 690,011 to 691,555
_2431
Group
Condition
Ac3H11
_2427
Ac3H11
_2428
Ac3H11
_2429
Ac3H11
_2430
Ac3H11
_2431
pH
LB, pH10
-0.3
-0.9
-0.3
-0.2
+0.0
stress
copper (II) chloride 2 mM
-0.7
-0.5
-0.1
+0.2
-0.3
pH
LB, pH10
-0.0
-1.1
+0.1
-0.1
-0.2
nitrogen source
L-Alanine (N)
+0.1
-0.2
+0.1
-0.8
-0.3
stress
Bacitracin 0.032 mg/ml
-0.1
-0.1
+0.2
-0.3
-0.5
nitrogen source
Ammonium chloride (N)
+0.3
-0.7
-0.1
-0.3
-0.1
motility
inner cut, R2A soft agar motility assay
-0.7
-0.0
+0.2
+0.1
-0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-0.5
-0.4
+0.0
-0.0
stress
Sisomicin 0.001 mg/ml
+0.4
-1.0
-0.0
+0.4
-0.2
stress
Cobalt chloride 0.32 mM
+0.3
-0.1
-0.3
-0.2
-0.3
nitrogen source
D-Alanine (N)
-0.2
-0.7
+0.2
-0.5
+0.6
carbon source
a-Ketoglutaric (C)
+0.4
-0.1
-0.2
-0.4
+0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
-0.3
-0.3
+0.0
phage
phage 93.1
-0.4
-0.1
+0.2
-0.2
+0.6
carbon source
L-Arabinose (C)
+0.3
+0.2
-0.0
-0.4
+0.4
stress
A22 0.025 mg/ml
+0.4
-0.2
+0.2
+0.3
-0.1
stress
perchlorate 10 mM
+0.3
-0.4
-0.1
+0.2
+0.6
stress
Sisomicin 0.004 mg/ml
+0.1
+0.5
+0.1
+0.3
-0.4
stress
Bacitracin 0.008 mg/ml
+0.2
+0.4
+0.3
-0.3
+0.1
stress
perchlorate 25 mM
+0.4
-0.0
-0.3
+0.4
+0.2
carbon source
D-Gluconic Acid (C)
+0.4
+0.3
+0.1
-0.4
+0.3
carbon source
D-Lactate (C)
+0.5
+0.4
-0.1
+0.2
-0.1
carbon source
succinate (C)
+0.6
+0.3
+0.1
+0.1
-0.2
carbon source
pyruvate (C)
+0.3
+0.5
+0.1
-0.2
+0.2
stress
Nickel (II) chloride 0.8 mM
+0.3
+0.3
+0.1
-0.0
+0.4
carbon source
D-Lactate (C)
+0.5
+0.3
-0.1
+0.1
+0.3
carbon source
D-Fructose (C)
+0.4
+0.4
+0.1
+0.1
+0.2
stress
Cobalt chloride 0.4 mM
+0.4
+0.2
+0.3
+0.4
+0.3
carbon source
succinate (C)
+0.5
+0.3
+0.1
+0.2
+0.5
carbon source
D-Gluconic Acid (C)
+0.4
+0.5
+0.2
+0.2
+0.5
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