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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2409 and Ac3H11_2410 are separated by 10 nucleotides
Ac3H11_2410 and Ac3H11_2411 are separated by 9 nucleotides
Ac3H11_2411 and Ac3H11_2412 are separated by 1 nucleotides
Ac3H11_2412 and Ac3H11_2413 are separated by 209 nucleotides
Ac3H11_2409 - Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 667,213 to 667,785
_2409
Ac3H11_2410 - Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 667,796 to 669,895
_2410
Ac3H11_2411 - Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 669,905 to 671,710
_2411
Ac3H11_2412 - hypothetical protein, at 671,712 to 671,876
_2412
Ac3H11_2413 - Probable signal peptide protein, at 672,086 to 672,904
_2413
Group
Condition
Ac3H11
_2409
Ac3H11
_2410
Ac3H11
_2411
Ac3H11
_2412
Ac3H11
_2413
nitrogen source
L-Alanine (N)
-0.3
-0.8
+0.0
-2.4
+0.1
carbon source
propionate (C)
-1.3
-0.7
-0.7
-0.5
+0.0
stress
D-Cycloserine 0.05 mg/ml
-0.8
-0.4
-0.1
-0.6
-0.7
carbon source
a-Ketoglutaric (C)
-1.9
-0.3
+0.1
-0.1
+0.1
pH
LB, pH10
-1.3
+0.0
-0.0
-0.7
+0.0
phage
phage 93.1
-2.0
-0.3
+0.0
+0.3
+0.0
pH
LB, pH10
-0.5
+0.1
-0.1
-1.2
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.3
-0.0
-0.0
-1.2
-0.1
motility
inner cut, R2A soft agar motility assay
-1.9
-0.7
-0.1
+1.2
+0.0
stress
Cisplatin 0.005 mg/ml
+0.1
-0.2
+0.0
-1.2
-0.1
carbon source
L-Arabinose (C)
-1.2
-0.2
-0.0
+0.3
-0.2
lb
LB
-0.9
-0.5
-0.1
+0.3
-0.1
phage
phage 93.2
-0.5
+0.1
-0.2
-1.0
+0.3
carbon source
succinate (C)
-0.2
-0.8
+0.0
-0.3
+0.1
lb
LB
-0.2
-0.1
+0.0
-1.0
+0.2
motility
inner cut, R2A soft agar motility assay
-1.2
-0.3
-0.0
+0.4
+0.1
stress
perchlorate 10 mM
+0.3
-0.3
-0.3
-0.5
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.7
+0.3
+0.0
-0.6
+0.0
carbon source
L-Malic (C)
-0.2
-1.1
+0.3
-0.1
+0.3
stress
Dimethyl Sulfoxide 6 vol%
-1.2
-0.1
-0.0
+0.4
+0.1
lb
LB
-0.5
+0.0
+0.0
-0.6
+0.3
stress
Sisomicin 0.001 mg/ml
+0.8
+0.0
+0.0
-0.6
-0.7
stress
Phosphomycin 0.06 mg/ml
+0.5
-0.1
+0.2
-0.3
-0.4
stress
syringaldehyde 2.5 mM
-0.8
+0.0
+0.1
+0.5
+0.1
nitrogen source
L-Threonine (N)
+0.6
-0.0
-0.1
-0.7
+0.2
stress
sodium fluoride 20 mM
-0.8
+0.1
+0.2
+0.6
+0.1
nitrogen source
Ammonium chloride (N)
-0.4
-0.4
+0.2
+0.6
+0.2
stress
Bacitracin 0.032 mg/ml
-0.4
-0.3
+0.1
+0.7
+0.2
lb
LB
-0.7
+0.2
+0.0
+1.2
+0.5
lb
LB
+1.2
-0.3
-0.0
+0.5
+0.1
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