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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_2403 and Ac3H11_2404 are separated by 66 nucleotides
Ac3H11_2404 and Ac3H11_2405 are separated by 10 nucleotides
Ac3H11_2405 and Ac3H11_2406 are separated by 171 nucleotides
Ac3H11_2406 and Ac3H11_2407 are separated by 597 nucleotides
Ac3H11_2403 - Alkanesulfonate utilization operon LysR-family regulator CbI, at 659,465 to 660,406
_2403
Ac3H11_2404 - Aspartate aminotransferase (EC 2.6.1.1), at 660,473 to 661,639
_2404
Ac3H11_2405 - hypothetical protein, at 661,650 to 662,066
_2405
Ac3H11_2406 - Permease of the drug/metabolite transporter (DMT) superfamily, at 662,238 to 663,080
_2406
Ac3H11_2407 - sensor histidine kinase, at 663,678 to 664,364
_2407
Group
Condition
Ac3H11
_2403
Ac3H11
_2404
Ac3H11
_2405
Ac3H11
_2406
Ac3H11
_2407
carbon source
L-Asparagine (C)
-4.9
-0.2
-0.2
-0.1
-0.0
carbon source
L-Arabinose (C)
-5.1
+0.0
-0.1
+0.2
-0.2
nitrogen source
L-Alanine (N)
-3.4
-0.3
-1.2
+0.0
-0.3
carbon source
D-Glucose (C)
-4.7
-0.1
-0.2
+0.0
+0.0
nitrogen source
L-Threonine (N)
-3.7
-1.5
+0.3
+0.2
-0.2
carbon source
Glycerol (C)
-4.4
-0.3
-0.2
+0.0
-0.0
carbon source
D-Fructose (C)
-5.1
-0.0
-0.0
-0.0
+0.4
carbon source
D-Galactose (C)
-4.7
-0.1
-0.1
-0.1
+0.1
carbon source
D-Galactose (C)
-4.5
-0.1
-0.2
+0.1
-0.0
carbon source
L-Glutamine (C)
-4.5
-0.1
+0.1
-0.1
-0.1
carbon source
D-Glucose (C)
-4.7
+0.1
+0.1
-0.1
+0.0
carbon source
L-Arabinose (C)
-4.8
+0.0
-0.1
+0.1
+0.1
carbon source
D,L-Lactate (C)
-4.6
-0.0
+0.0
-0.0
-0.0
carbon source
Tween 20 (C)
-4.5
-0.1
+0.1
-0.1
-0.1
carbon source
D-Lactate (C)
-4.5
-0.1
+0.2
-0.3
-0.0
carbon source
D-Sorbitol (C)
-4.7
-0.1
+0.3
+0.1
-0.0
carbon source
D-Ribose (C)
-4.7
-0.0
+0.1
+0.2
-0.1
carbon source
D-Ribose (C)
-4.9
+0.1
+0.1
+0.3
+0.1
carbon source
L-Lactate (C)
-4.5
-0.0
+0.2
+0.2
-0.1
carbon source
D-Lactate (C)
-4.3
+0.1
-0.2
+0.1
-0.1
carbon source
pyruvate (C)
-4.6
+0.1
+0.1
+0.2
+0.0
carbon source
D,L-Lactate (C)
-4.6
-0.1
+0.3
+0.2
+0.0
carbon source
D-Fructose (C)
-4.4
+0.0
+0.1
+0.1
+0.1
carbon source
D-Fructose (C)
-4.5
+0.0
+0.2
+0.2
-0.0
nitrogen source
L-Histidine (N)
-3.9
-0.0
-0.1
+0.4
-0.2
carbon source
D-Galactose (C)
-4.1
-0.2
+0.3
+0.1
+0.3
carbon source
D-Gluconic Acid (C)
-3.8
+0.2
-0.3
+0.4
-0.0
pH
LB, pH10
+6.5
+0.1
+0.2
+0.1
-0.2
pH
LB, pH10
+6.6
-0.0
-0.1
+0.2
+0.1
stress
D-Cycloserine 0.05 mg/ml
+6.8
+0.2
+0.0
+1.5
-0.6
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